View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8919_low_59 (Length: 211)
Name: NF8919_low_59
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 32305658 - 32305480
Alignment:
| Q |
20 |
gtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
119 |
Q |
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||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32305658 |
gtcagtacaagacacaacgccgggacatgcttgatccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
32305559 |
T |
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| Q |
120 |
ttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaacaccacca |
198 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
32305558 |
ttctcataggaaccgtttctatcaccatagtcttccaatagcaaggaagcatcacatccctgatttggcaacaccacca |
32305480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 32814666 - 32814842
Alignment:
| Q |
20 |
gtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
119 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814666 |
gtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
32814765 |
T |
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| Q |
120 |
ttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaacaccac |
196 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | |||||||| |
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| T |
32814766 |
ttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatcacatccctgatttcgtaacaccac |
32814842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 32309790 - 32309615
Alignment:
| Q |
21 |
tcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgct |
120 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309790 |
tcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgct |
32309691 |
T |
|
| Q |
121 |
tctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaacaccac |
196 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||| | |||||||| |
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| T |
32309690 |
tctcataggaaccatttctatcaccattgtcttccaatagcaaggaagcatcacatccctgatttcgtaacaccac |
32309615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 32565043 - 32565219
Alignment:
| Q |
20 |
gtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
119 |
Q |
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||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565043 |
gtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
32565142 |
T |
|
| Q |
120 |
ttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaacaccac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||| | |||||||| |
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| T |
32565143 |
ttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatcacaaccctgatttagaaacaccac |
32565219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 28221002 - 28220826
Alignment:
| Q |
20 |
gtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
28221002 |
gtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaatcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgc |
28220903 |
T |
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| Q |
120 |
ttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaacaccac |
196 |
Q |
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||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||| || ||||| |||||||||| |
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| T |
28220902 |
ttctcataggaactgtttctatcaccattgtcctccaacaacaaggaagcatcacaaccctgattcagcaacaccac |
28220826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 28215254 - 28215376
Alignment:
| Q |
20 |
gtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgc |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28215254 |
gtcagcacaagagacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgc |
28215353 |
T |
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| Q |
120 |
ttctcataggaaccgtttctatc |
142 |
Q |
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|||||||||||| ||||||||| |
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| T |
28215354 |
ttctcataggaaatgtttctatc |
28215376 |
T |
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