View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8919_low_6 (Length: 758)

Name: NF8919_low_6
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8919_low_6
NF8919_low_6
[»] chr5 (5 HSPs)
chr5 (2-528)||(12877126-12877651)
chr5 (2-119)||(12877658-12877775)
chr5 (2-87)||(16773804-16773889)
chr5 (601-723)||(32030024-32030145)
chr5 (2-60)||(43442220-43442278)
[»] chr4 (8 HSPs)
chr4 (527-742)||(46925391-46925602)
chr4 (529-742)||(26403396-26403594)
chr4 (601-714)||(39186974-39187087)
chr4 (3-72)||(7539602-7539671)
chr4 (528-657)||(15606267-15606396)
chr4 (607-657)||(15606698-15606748)
chr4 (7-81)||(41346962-41347036)
chr4 (2-84)||(37109345-37109427)
[»] chr7 (6 HSPs)
chr7 (536-742)||(42903905-42904111)
chr7 (6-84)||(22760863-22760941)
chr7 (2-84)||(26459404-26459486)
chr7 (3-84)||(23552118-23552199)
chr7 (3-84)||(39631844-39631925)
chr7 (3-84)||(43215184-43215265)
[»] chr8 (7 HSPs)
chr8 (532-698)||(42143850-42144016)
chr8 (527-630)||(4942567-4942670)
chr8 (525-630)||(42144274-42144380)
chr8 (6-81)||(36205198-36205273)
chr8 (4-81)||(2792646-2792723)
chr8 (3-84)||(26061688-26061769)
chr8 (534-632)||(36114780-36114877)
[»] chr2 (8 HSPs)
chr2 (3-84)||(5147674-5147755)
chr2 (5-92)||(42327392-42327479)
chr2 (2-84)||(11738038-11738120)
chr2 (2-84)||(19244109-19244191)
chr2 (6-84)||(29503271-29503349)
chr2 (2-84)||(40416384-40416466)
chr2 (2-83)||(16918572-16918653)
chr2 (4-85)||(38551767-38551848)
[»] chr3 (3 HSPs)
chr3 (3-85)||(37051289-37051371)
chr3 (2-84)||(28703398-28703480)
chr3 (556-657)||(23493287-23493387)
[»] chr1 (4 HSPs)
chr1 (4-84)||(51814494-51814574)
chr1 (2-53)||(2799893-2799944)
chr1 (2-49)||(6650630-6650677)
chr1 (2-84)||(8177176-8177258)
[»] scaffold0961 (1 HSPs)
scaffold0961 (584-657)||(909-981)
[»] scaffold0118 (1 HSPs)
scaffold0118 (2-84)||(41627-41709)
[»] scaffold0194 (1 HSPs)
scaffold0194 (4-53)||(13042-13091)
[»] chr6 (1 HSPs)
chr6 (2-43)||(24256816-24256857)


Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 2 - 528
Target Start/End: Complemental strand, 12877651 - 12877126
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggttccattgatcttggttta 101  Q
    |||| ||||||||||||||||||||||||| |||||   ||||||||| | || ||||| || ||||||||||||| |||||| | ||||||||||||||    
T  12877651 cagaaagaatcgaacctgagacattgagaaggaacacgttcccagatcccgaaccaataccactagaccaactcaaatgggtttccttgatcttggttta 12877552  T
Q  102 tctttagagaaggtaggaacaaaaatttatcttctcaaattggtcgactaatccaatttttcattttataatgagcacccattgtactcgctatataata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||    
T  12877551 tctttagagaaggtaggaacaaaaatttatcttctcaaattggtcgactaatccaatttttcattttataatgagtacccattatactcactttataata 12877452  T
Q  202 aaatttgcttataaaaagacttaaagagaataatctttaacattttgcaaatacaagaatacatcgcaaagttgttaaacattaatgaaaatagtcttat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  12877451 aaatttgcttataaaaagacttaaagagaataatctttaacattttgcaaatacaagaatacatcgcagagttgttaaacattaataaaaatagtcttat 12877352  T
Q  302 catttttattttgtcggtaaccaaagttacacataccacataaaactcacacatataatcgtgatgttgcatatcaaaaatcaaataaaaatgtctaatt 401  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  12877351 cattttta-tttgtcggtaaccaaagttacacataccacataaaactcacacatataatcgtgatgttgcatatcaaaaatcagataaaaatgtctaact 12877253  T
Q  402 tagcaatattgacattgacaaattaagctaatggacgtcttatcaacttacttctattgtcatatacttgacggtaaatacatagtcnnnnnnngacaat 501  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||       ||||||    
T  12877252 tagcaatattgacattgacaaattaaactaacggacgtcttatcaacttacttctattgtcatatacttgacagtaagtacgtagtctttttttgacaat 12877153  T
Q  502 ggaaagaaaaataaatatgtaatctta 528  Q
    |||||||||||||||||||||||||||    
T  12877152 ggaaagaaaaataaatatgtaatctta 12877126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 12877775 - 12877658
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggttccattgatcttggttta 101  Q
    |||||||||||||||||||||||||||| |  |||| ||||||| ||| |||| ||||  || ||||||||||||||||| |||| ||||| ||||| ||    
T  12877775 cagagagaatcgaacctgagacattgaggagaaacacactcccaaatcccaaaccaatgccactagaccaactcaagtggattcccttgatattggtata 12877676  T
Q  102 tctttagagaaggtagga 119  Q
    ||||||||||||||||||    
T  12877675 tctttagagaaggtagga 12877658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 16773889 - 16773804
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggttcca 87  Q
    |||||||||||||||||||||| | ||| | || || |||||||| || ||| |||||| ||  ||||||||||||||||||||||    
T  16773889 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggttcca 16773804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 723
Target Start/End: Original strand, 32030024 - 32030145
Alignment:
Q  601 catgttgtttggatgaatgaaaaagcaagtttttgtaacgtggtttttgtctccaaacg-tggttttgctgaagctcagatttgtagcttctacggcagg 699  Q
    |||||||||||||||||||||||||   |||| |  |||||| |||| || || ||| | | ||||| |||||||| ||||||||||||||| |||| ||    
T  32030024 catgttgtttggatgaatgaaaaagtcggtttgtaaaacgtgattttggt-tcaaaaagcttgttttcctgaagctgagatttgtagcttctgcggctgg 32030122  T
Q  700 gtaaaacgtggtttcagcctttaa 723  Q
    | |||||||||||||| |||||||    
T  32030123 g-aaaacgtggtttcaacctttaa 32030145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 43442278 - 43442220
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaata 60  Q
    |||||||||||||||||||||| ||||| | || || |||||||||||||||| |||||    
T  43442278 cagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaata 43442220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 3e-81; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 527 - 742
Target Start/End: Original strand, 46925391 - 46925602
Alignment:
Q  527 tagtatgtgtttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagc 626  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||| ||||| |||||||||||||   |||||||||||||| ||    
T  46925391 tagtatgtgtttggcaacgcgttttgaagctccaaacgtggtttactttttccaaacgccattttgtccttaaacatgtt---tggatgaatgaaaaggc 46925487  T
Q  627 aagtttttgtaacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcagggtaaaacgtggtttcagcctttaaaga 726  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  46925488 aagtttttgaaacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcaggggaaaatgtgg-ttcagcctttaaaga 46925586  T
Q  727 tgtgtgacatgtttat 742  Q
    ||||||||||||||||    
T  46925587 tgtgtgacatgtttat 46925602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 529 - 742
Target Start/End: Complemental strand, 26403594 - 26403396
Alignment:
Q  529 gtatgtgtttggcaacgcgtgttgagactccaaacgtggtttact-ttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagca 627  Q
    |||||||||||||||| | | ||||| ||||||| ||| |||||| |||| |||| | ||||||  |||||||||||||||| ||||||||||           
T  26403594 gtatgtgtttggcaacacattttgaggctccaaatgtgttttactatttttcaaacgtcgttttatccttaaacatgttgttcggatgaatga------- 26403502  T
Q  628 agtttttgtaacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcagggtaaaacgtggtttcagcctttaaa--- 724  Q
             |||||||||||||||| ||||| |||||||||||||||||| ||| ||| ||||||| |   || |||||||||||||||||||||||       
T  26403501 ---------aacgtggtttttgtct-caaacatggttttgctgaagctcaaattcgtaacttctacag--aggaaaaacgtggtttcagcctttaaagat 26403414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 601 - 714
Target Start/End: Original strand, 39186974 - 39187087
Alignment:
Q  601 catgttgtttggatgaatgaaaaagcaagtttttgtaacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcaggg 700  Q
    |||||||||||||||||||||||||  ||||| || || |||||||| ||||| |||||  |||||||||||||| ||||| | ||||||| |||  | |    
T  39186974 catgttgtttggatgaatgaaaaagtgagtttgtgaaaagtggttttggtctcaaaacgcagttttgctgaagctgagattcgaagcttctgcggttgag 39187073  T
Q  701 taaaacgtggtttc 714  Q
     |||||||||||||    
T  39187074 gaaaacgtggtttc 39187087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 7539671 - 7539602
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaa 72  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||  ||||||||| || ||||||||    
T  7539671 agagagaatcgaacctgagaccttgagaaggagcatactcccagatccaaaatcaataccactagaccaa 7539602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 657
Target Start/End: Original strand, 15606267 - 15606396
Alignment:
Q  528 agtatgtgtttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagca 627  Q
    ||||||||||||||| | ||| || || |||| ||| ||| ||||||||    || | |||||||| |||   |||||||||||||||||||||||||||    
T  15606267 agtatgtgtttggcaccacgtttttaggctccgaacatgggttacttttgtggaacgtcgttttgctcttttccatgttgtttggatgaatgaaaaagca 15606366  T
Q  628 agtttttgtaacgtggtttttgtctccaaa 657  Q
    ||||| || |||| ||||| ||||||||||    
T  15606367 agtttgtgaaacgcggtttctgtctccaaa 15606396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 657
Target Start/End: Original strand, 15606698 - 15606748
Alignment:
Q  607 gtttggatgaatgaaaaagcaagtttttgtaacgtggtttttgtctccaaa 657  Q
    |||||||||||||||||||||||||| || |||| ||||| ||||||||||    
T  15606698 gtttggatgaatgaaaaagcaagtttgtgaaacgcggtttctgtctccaaa 15606748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 41346962 - 41347036
Alignment:
Q  7 agaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgg 81  Q
    ||||||||||||||||| | ||| | || ||||||||||||||||||| ||||| ||| || ||||| |||||||    
T  41346962 agaatcgaacctgagacttcgaggaggagcatactcccagatctcaaaccaataccatcaggccaacccaagtgg 41347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 37109345 - 37109427
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||||||| ||||| | || || |||||||| || |||  ||||| || ||| ||||| ||||||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 2e-79; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 536 - 742
Target Start/End: Original strand, 42903905 - 42904111
Alignment:
Q  536 tttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagcaagtttttg 635  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  42903905 tttgacaacgcgttttgaggctccaaacgtggtttactttttctaaatgtcgttctgcccttaaacatgttgtttggatgaatgaaaaagcaagtttgtg 42904004  T
Q  636 taacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcagggtaaaacgtggtttcagcctttaaagatgtgtgaca 735  Q
     || ||| |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42904005 aaatgtgatttttgtctccaaacgtggttttgcttaagctcagattcatagcttctacggcaggggaaaacgtggtttcagcctttaaagatgtgtgaca 42904104  T
Q  736 tgtttat 742  Q
    |||||||    
T  42904105 tgtttat 42904111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 22760941 - 22760863
Alignment:
Q  6 gagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||| ||||| | || || |||||||| || ||| |||||| ||  |||||||| ||||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 26459404 - 26459486
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||||||| ||||| | || || |||||||| || |||  ||||| || ||| ||||| ||||||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 23552199 - 23552118
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||| |||||| ||||| | || || |||||||| || ||| |||||| || ||| ||||| ||||||||||    
T  23552199 agagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggtt 23552118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 39631925 - 39631844
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    ||||||||||||||||||||| ||||| | || | ||||||||| || |||  ||||| || ||| ||||| ||||||||||    
T  39631925 agagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaataccactaggccaacccaagtgggtt 39631844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 43215265 - 43215184
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    ||||||||||||||||||||| ||||| | || || ||||| || || |||  ||||| || ||||||||| ||||||||||    
T  43215265 agagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 698
Target Start/End: Complemental strand, 42144016 - 42143850
Alignment:
Q  532 tgtgtttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagcaagtt 631  Q
    ||||||||||||| ||| || || ||||||| | || |||||||| ||||| ||| |||||| | |   ||||||||||||||||||||||||||||||     
T  42144016 tgtgtttggcaacacgtttttaggctccaaatgcgggttacttttgccaaacgccattttgcacattttcatgttgtttggatgaatgaaaaagcaagta 42143917  T
Q  632 tttgtaacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcag 698  Q
    |    ||||||||||||||  | ||||    |||| |||||||| ||||||| ||||||||||||||    
T  42143916 tggaaaacgtggtttttgttccaaaacacaattttcctgaagctgagatttggagcttctacggcag 42143850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 630
Target Start/End: Complemental strand, 4942670 - 4942567
Alignment:
Q  527 tagtatgtgtttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagc 626  Q
    ||||||||||||| |||| ||| || || || ||||||||| ||||||||  |||| ||| |||||||| |   ||||||||||||||||||||||||||    
T  4942670 tagtatgtgtttgacaacacgtttttaggcttcaaacgtgggttacttttgtcaaaagccattttgcccattttcatgttgtttggatgaatgaaaaagc 4942571  T
Q  627 aagt 630  Q
    ||||    
T  4942570 aagt 4942567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 630
Target Start/End: Original strand, 42144274 - 42144380
Alignment:
Q  525 cttagtatgtgtttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgt-ttggatgaatgaaaa 623  Q
    |||||| ||||||||||||| ||| || || |||||||||||| |||||||| ||||| ||  |||||||| |   |||||||| ||||||| |||||||    
T  42144274 cttagtgtgtgtttggcaacacgtttttaggctccaaacgtgggttacttttaccaaacgcaattttgcccattttcatgttgtgttggatggatgaaaa 42144373  T
Q  624 agcaagt 630  Q
    |||||||    
T  42144374 agcaagt 42144380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 36205273 - 36205198
Alignment:
Q  6 gagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgg 81  Q
    ||||||||||| |||||| ||||| | || || |||||||||||||||| ||||| ||| |||||||| |||||||    
T  36205273 gagaatcgaacatgagaccttgaggaggagcacactcccagatctcaaaccaataacatcagaccaacccaagtgg 36205198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 2792723 - 2792646
Alignment:
Q  4 gagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgg 81  Q
    ||||||| |||||||||||  | ||| | |||||||||| |||||||||| |||| | |||||| |||||||||||||    
T  2792723 gagagaaccgaacctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgg 2792646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 26061769 - 26061688
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    ||||| |||||||| |||||||||||||| || ||||||| ||  ||||||   |||||||| ||||||||||| |||||||    
T  26061769 agagataatcgaacatgagacattgagaaggagcatactctcaagtctcaagctaatatcatcagaccaactcatgtgggtt 26061688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 632
Target Start/End: Complemental strand, 36114877 - 36114780
Alignment:
Q  534 tgtttggcaacgcgtgttgagactccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagcaagttt 632  Q
    ||||||||| | ||| || ||||||||||||||||||| |||| ||||| |   |||||| |||   ||||||||||||||| | ||||||||||||||    
T  36114877 tgtttggcaccacgtttttagactccaaacgtggtttatttttgccaaacgtgattttgctctttttcatgttgtttggatg-acgaaaaagcaagttt 36114780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 5147674 - 5147755
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    ||||||||||||| | ||||| ||||||| || |||||||||||||||||| |||||| || ||||||||| ||||||||||    
T  5147674 agagagaatcgaatccgagaccttgagaaggagcatactcccagatctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 42327392 - 42327479
Alignment:
Q  5 agagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggttccattgat 92  Q
    ||||||||||||||||||| ||||| | || || |||||||| || |||  ||||| || ||| ||||| |||||||||||| |||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttccgttgat 42327479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 11738038 - 11738120
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||| |||||||||||| || ||||| | ||||| |||| |||||||| | |||||| || ||  ||||||||||||||||    
T  11738038 cagagataatcgaacctgaaactttgaggaggaacacactctcagatctctagtcaataccactaatccaactcaagtgggtt 11738120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 19244191 - 19244109
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||||||| ||| | | || || |||| ||| || ||| |||||| || ||||||||| ||||||||||    
T  19244191 cagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 29503349 - 29503271
Alignment:
Q  6 gagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||| ||||| | || || |||||||| || |||| ||||| || ||| ||||| ||||||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtt 29503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 40416384 - 40416466
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||||||| || || | || ||||||||||| |  ||| |||||| || ||| ||||| ||||||||||    
T  40416384 cagagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 16918572 - 16918653
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggt 83  Q
    ||||||||||| ||||| |||| ||||| | || || ||||||||||| |||| ||||| || ||| ||||| |||||||||    
T  16918572 cagagagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 38551848 - 38551767
Alignment:
Q  4 gagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggttc 85  Q
    |||||||||||||   |||| || |||| || || ||||||| || ||||||||||| |||||||||||| |||||| ||||    
T  38551848 gagagaatcgaacacaagaccttaagaaagagcacactcccaaatttcaaatcaataccattagaccaacccaagtgagttc 38551767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 37051289 - 37051371
Alignment:
Q  3 agagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggttc 85  Q
    ||||||||||||||||||||| || || | ||||| ||||||||||| ||||||||||||| || | |||| |||||||||||    
T  37051289 agagagaatcgaacctgagactttaaggaggaacacactcccagatcccaaatcaatatcactaaatcaacccaagtgggttc 37051371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 28703398 - 28703480
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||||||| ||||  | || || ||||||||||| |||   ||||||| | ||||||| ||||||||||    
T  28703398 cagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaatatcactggaccaacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 657
Target Start/End: Original strand, 23493287 - 23493387
Alignment:
Q  556 ctccaaacgtggtttactttttccaaatgccgttttgcccttaaacatgttgtttggatgaatgaaaaagcaagtttttgtaacgtggtttttgtctcca 655  Q
    |||||||||||||||| |||| ||||| |  || |||| |||  ||||| |||||||||| | |||||||||||||| || || | ||||| ||||||||    
T  23493287 ctccaaacgtggtttatttttgccaaacgtggtgttgcacttttacatgctgtttggatg-acgaaaaagcaagtttctgaaaagcggtttatgtctcca 23493385  T
Q  656 aa 657  Q
    ||    
T  23493386 aa 23493387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 51814574 - 51814494
Alignment:
Q  4 gagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||||||||||||| ||||| | || || |||| |||||||||| |||||| ||| || ||||| ||||||||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 2799944 - 2799893
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaa 53  Q
    |||||||||||||||||||||| ||||| | || || |||||||||||||||    
T  2799944 cagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaa 2799893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 6650677 - 6650630
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatc 49  Q
    |||||||||||||||||||||||||||| | || ||||||||| ||||    
T  6650677 cagagagaatcgaacctgagacattgaggaggagcatactccccgatc 6650630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 8177176 - 8177258
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    ||||||||||||||||||| || ||||| | || || ||||||||||| |||  ||||| || ||| ||||||||| ||||||    
T  8177176 cagagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactaggccaactcaaatgggtt 8177258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 657
Target Start/End: Complemental strand, 981 - 909
Alignment:
Q  584 gccgttttgcccttaaacatgttgtttggatgaatgaaaaagcaagtttttgtaacgtggtttttgtctccaaa 657  Q
    |||||||||| |||   |||||||||||||||||||||||||||| ||| || ||||  |||||||||||||||    
T  981 gccgttttgctcttttccatgttgtttggatgaatgaaaaagcaattttgtgaaacg-cgtttttgtctccaaa 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 41627 - 41709
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcccagatctcaaatcaatatcattagaccaactcaagtgggtt 84  Q
    |||||||||| ||||||||||| | ||| | || ||||||| ||||||||||  ||||| || ||| ||||| ||||||||||    
T  41627 cagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 13042 - 13091
Alignment:
Q  4 gagagaatcgaacctgagacattgagaatgaacatactcccagatctcaa 53  Q
    |||||||||||||||||||| ||||| | || || |||||||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaa 13091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 24256816 - 24256857
Alignment:
Q  2 cagagagaatcgaacctgagacattgagaatgaacatactcc 43  Q
    ||||||||||||||| |||||| |||||||||| ||||||||    
T  24256816 cagagagaatcgaacttgagaccttgagaatgagcatactcc 24256857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University