View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8919_low_7 (Length: 627)
Name: NF8919_low_7
Description: NF8919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8919_low_7 |
 | |
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| [»] scaffold0009 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 11232367 - 11232977
Alignment:
| Q |
1 |
tccaatttatactattcaatccttctaagatcaactattagaaacacatgatatcgagacaacaacatttggatagattagaaaaaataattgctcgttt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11232367 |
tccaatttatactattaaatccttctaagatcaactattagaaacacatgatatcgagacaacaacatttggatagattagaaaaaataattgctcgttt |
11232466 |
T |
|
| Q |
101 |
aaatgaccgccattgagattatgaatacacacacttcatctattctttatatgtataatataattcataaaatccataacaaatcaattatctcacacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11232467 |
aaatgaccgccattgagattatgaatacacacacttcatctattctttatatgtataatataattcataaaatccataacaaatcaattatctcacacac |
11232566 |
T |
|
| Q |
201 |
aaattgagagaccatcttttaaaattccacttgttattcatgagattgctacctaaggcatattcactaattttaaatcatatattaagcgcttcacttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11232567 |
gaattgagagaccatcttttaaaattccacttgttattcatgagattgctacctaaggcatattcactaattttaaatcatatattaagcgctttacttt |
11232666 |
T |
|
| Q |
301 |
ccgatctctttgcctcttaaacacttcacttcccgataattaagtatagctgactcaacggtagttaactgttgtcgatttgctccacggtagttaacta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11232667 |
ccgatctctttgcctcttaaacacttcacttcccgataattaagtatagctgactcaacggtagttaactgttgtcgatttgctcaacggtagttaacta |
11232766 |
T |
|
| Q |
401 |
ccaccaaagatatttgcgtcatttcaatgtatgtttaggaaacttttaatgtgagaaaagcaatttttaatcatttattgcatatgcgaaacccgtccca |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11232767 |
ccaccaaagatatttgcgtcatttcaatgtatgtttaggaaacttttaatgtgagaaaagcaatttttaatcatttattgcatatgcgaaacccgtccca |
11232866 |
T |
|
| Q |
501 |
cacgctagcttatttagtgacataaaattacaaataaaagaaacactagaaatgtatatgcaatattgatacattaaaagacaatagaaacaatgtctca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11232867 |
cacgctagcttatttagtgacataaaattacaaataaaagaaacactggaaatgtatatgcaatattgatacattaaaagacaatagaaacaatgactca |
11232966 |
T |
|
| Q |
601 |
cacattgaaat |
611 |
Q |
| |
|
||||||||||| |
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|
| T |
11232967 |
cacattgaaat |
11232977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 275 - 611
Target Start/End: Complemental strand, 8852979 - 8852643
Alignment:
| Q |
275 |
aaatcatatattaagcgcttcacttcccgatctctttgcctcttaaacacttcacttcccgataattaagtatagctgactcaacggtagttaactgttg |
374 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8852979 |
aaatcatatattaagcgcttcactttccgatctctttgcctcttaaacacttcacttcctgataattaagtatagctgactcaacggtagttaattgtta |
8852880 |
T |
|
| Q |
375 |
tcgatttgctccacggtagttaactaccaccaaagatatttgcgtcatttcaatgtatgtttaggaaacttttaatgtgagaaaagcaatttttaatcat |
474 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8852879 |
tcgatttgctcagcggtagttaactaccaccaaagatatttgcgtcatttcaatgtatgtttagaaaacttttaatgtgagaaaagcaatttttaatcat |
8852780 |
T |
|
| Q |
475 |
ttattgcatatgcgaaacccgtcccacacgctagcttatttagtgacataaaattacaaataaaagaaacactagaaatgtatatgcaatattgatacat |
574 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |
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|
| T |
8852779 |
ttattgcatatgcgaaacccatcccacacgctagcttatttagtgacataaaattacaaataaaagaaacactataaatgaacatgcaatattgatacat |
8852680 |
T |
|
| Q |
575 |
taaaagacaatagaaacaatgtctcacacattgaaat |
611 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8852679 |
taaaagacactagaaacaatgtctcacacattgaaat |
8852643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 457
Target Start/End: Original strand, 16294044 - 16294147
Alignment:
| Q |
355 |
tcaacggtagttaactgttgtcgatttgctccacggtagttaactaccaccaaagatatttgcgtcatttcaatgtatg-tttaggaaacttttaatgtg |
453 |
Q |
| |
|
|||||||||||||||||||| | |||| || ||||||||||||||||||| || || |||||| |||| || | || |||||||||||||| ||||| |
|
|
| T |
16294044 |
tcaacggtagttaactgttgccaatttattcgacggtagttaactaccaccggaggtagttgcgtaatttttatttgtgttttaggaaacttttgatgtg |
16294143 |
T |
|
| Q |
454 |
agaa |
457 |
Q |
| |
|
|||| |
|
|
| T |
16294144 |
agaa |
16294147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1092516 - 1092776
Alignment:
| Q |
1 |
tccaatttatactattcaatccttctaagatcaactattagaaacacatgatatcgagacaacaacat---ttggatagattagaaaaaataattgctcg |
97 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||| || |
|
|
| T |
1092516 |
tccaatttacactattcaattcttctaagatcaactattagaagaacatgatatccagacaacaacatcatttgaatagattagaaaaaataattgatca |
1092615 |
T |
|
| Q |
98 |
tttaaatgaccgccattgagattatgaatacacacacttcatctattctttatatg----------tataatataattcataaaatccataaca-aatca |
186 |
Q |
| |
|
||||||||| | | |||||||||||||| || ||||||||||||||| | |||| |||| ||||||||||||||||||||||| ||||| |
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|
| T |
1092616 |
tttaaatgatcatcgttgagattatgaattcatacacttcatctattcatcatataccacatgcaatatagtataattcataaaatccataacacaatca |
1092715 |
T |
|
| Q |
187 |
attatctcacacacaaattgagagaccatcttttaaaattccacttgttattcatgagatt |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1092716 |
attatctcacacacaaattgagagactatcttttaaaattccacttgttattcatgagatt |
1092776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 34246383 - 34246279
Alignment:
| Q |
151 |
atgtataatataattcataaaatccataacaaa-tcaattatctcacacacaaattgagagaccatcttttaaaattccacttgttattcatgagattgc |
249 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||| | ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34246383 |
atgtataatacaattcacaaaatacataacatagtcaattatctcacactcaaattgagagactatcttttgaaattccacttgttattcatgagattgc |
34246284 |
T |
|
| Q |
250 |
tacct |
254 |
Q |
| |
|
||||| |
|
|
| T |
34246283 |
tacct |
34246279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 7e-63; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 17513542 - 17513249
Alignment:
| Q |
12 |
ctattcaatccttctaagatcaactattagaaacacatgatatcgagacaacaacat---ttggatagattagaaaaaa--taattgctcgtttaaatga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||| | ||||||||| |
|
|
| T |
17513542 |
ctattcaatccttctaagatcaactatttgaagaacatgatatcgagacaacaacatcatttgaatagattagaaaaaaaataattgattatttaaatga |
17513443 |
T |
|
| Q |
107 |
ccgccattgagattatgaatacacacacttcatctattctttata---------------tgtataatataattcataaaatccataaca-aatcaatta |
190 |
Q |
| |
|
| || |||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17513442 |
tcaccgttgaaattatgaattcacacacttcatctattcattataccacaggcaatatcatgtataatataattcataaaatccataacacaatcaatta |
17513343 |
T |
|
| Q |
191 |
tctcacacacaaattgagagaccatcttttaaaattccacttgttattcatgagattgctac-ctaaggcatattcactaattttaaatcatat |
283 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
17513342 |
tctcacacactaattgagagactatcttttaaaattccacttggtaatcatgagattgctactttaaagcatattcactaattttaaaccatat |
17513249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 17513880 - 17513746
Alignment:
| Q |
151 |
atgtataatataattcataaaatccataaca-aatcaattatctcacacacaaattgagagaccatcttttaaaattccacttgttattcatgagattgc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||| | |
|
|
| T |
17513880 |
atgtataatataattcataaaatccataacacaatcaattatctcacacactaattgagagactatcttttaaaattccacttggtaatcatgagatttc |
17513781 |
T |
|
| Q |
250 |
tac-ctaaggcatattcactaattttaaatcatat |
283 |
Q |
| |
|
||| ||| | |||||||||||||||||| ||||| |
|
|
| T |
17513780 |
tactttaaagtatattcactaattttaaaccatat |
17513746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17514029 - 17513962
Alignment:
| Q |
1 |
tccaatttatactattcaatccttctaagatcaactattagaaacacatgatatcgagacaacaacat |
68 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
17514029 |
tccaatttatgctattcaatccttctaagatcaacactttgaagaacatgatatcgagacaacaacat |
17513962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 17513681 - 17513609
Alignment:
| Q |
18 |
aatccttctaagatcaactattagaaacacatgatatcgagacaacaa---catttggatagattagaaaaaa |
87 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
17513681 |
aatccttctaagatcaactatttgaagaacatgatatcgagacaacaacatcatttgaatagattagaaaaaa |
17513609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 41396843 - 41396898
Alignment:
| Q |
411 |
tatttgcgtcatttcaatgtatgtttaggaaacttttaatgtgagaaaagcaattt |
466 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
41396843 |
tatttgcatcatttgaatgtctgtttaggaaacttttgatatgagaaaagcaattt |
41396898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 17513948 - 17513895
Alignment:
| Q |
98 |
tttaaatgaccgccattgagattatgaatacacacacttcatctattctttata |
151 |
Q |
| |
|
||||||||| | ||||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
17513948 |
tttaaatgatcaccattgaaattatgaattcacacacttcatctattcattata |
17513895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 575
Target Start/End: Complemental strand, 24303975 - 24303922
Alignment:
| Q |
522 |
ataaaattacaaataaaagaaacactagaaatgtatatgcaatattgatacatt |
575 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||| | |||||| |||||||||| |
|
|
| T |
24303975 |
ataaaattactaacaaaagaagcactagaaatgtgtttgcaattttgatacatt |
24303922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 455 - 589
Alignment:
| Q |
151 |
atgtataatataattcataaaatccataacaaa-tcaattatctcacacacaaattgagagaccatcttttaaaattccacttgttattcatgagattgc |
249 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| | ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
455 |
atgtataatataattcacaaaatacataacatagtcaattatctcacactcaaattgagagactatcttttgaaattccacttgttattcatgagattgc |
554 |
T |
|
| Q |
250 |
tacc-taaggcatattcactaattttaaatcatat |
283 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| ||||| |
|
|
| T |
555 |
taccttaaggcatactcactaatttcaaaccatat |
589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 464
Target Start/End: Complemental strand, 31064449 - 31064373
Alignment:
| Q |
388 |
cggtagttaactaccaccaaagatatttgcgtcatttcaatgtatgtttaggaaacttttaatgtgagaaaagcaat |
464 |
Q |
| |
|
||||||||||||| | || || |||||||||||||| |||| || ||||||||||||| | |||||||||||||| |
|
|
| T |
31064449 |
cggtagttaactatcgtcagaggtatttgcgtcattttgatgtgtggttaggaaacttttgaagtgagaaaagcaat |
31064373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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