View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8920_high_2 (Length: 441)
Name: NF8920_high_2
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 53 - 430
Target Start/End: Complemental strand, 6180587 - 6180199
Alignment:
| Q |
53 |
gaaagaaaagggtccctgctttattttactcttcttttttgtgtgaaga-------------------ctgcgacgattaattcttcgagcctgataaga |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
6180587 |
gaaagaaaagggtccctgctttattttactcttcttttttgtgtgaagagaatatactctttgcatgactgcgacgattaattcttcgagcttgataaga |
6180488 |
T |
|
| Q |
134 |
ctataatagacggcaaatttatgaaactgaatttgaatccatgatatgtggttaaactagatgagactcttattagtccatgttctcttggataacactc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6180487 |
ctataatagacggcaaatttatgaaactgaatttgaatccatgatatgtggttaagctagaagagactcgtattagtccatgttctcttggataacac-- |
6180390 |
T |
|
| Q |
234 |
ttttaatgagtttggtgaagtaagtatctcatccaatcatgttatatcannnnnnnaaa-tatcttctaaagcaaatttaaatttggagttattttaccc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6180389 |
-------gagtttggtgaagtaagtatctcatccaatcatgttatatcatttttttaaaatttcttctaaagcaaatttaaatttggagttattttaccc |
6180297 |
T |
|
| Q |
333 |
aacacaactgcttccttatatcaaggaattttccttattttatttatctcaagtaaagtttcttgtctgtgatagatctaagcattctgtttttgtct |
430 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6180296 |
aacacaactccttccttatatcaaggaattttccttattttatttatctcaagtaaagtttcttgtccgtgatagatctaagcattctgtttttgtct |
6180199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 6146138 - 6146020
Alignment:
| Q |
210 |
tccatgttctcttggataacactcttttaatgagtttggtgaagtaagtatctcatccaatcatgttatatcannnnnnnaaatatcttctaaagcaaat |
309 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||||| | |||||||||| ||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
6146138 |
tccatgttctcttgggtaatactcttttaataagtttggtgaagcaggtatctcatctaatcatgttgtatcattttctaaaatatcttgtaaagcaaat |
6146039 |
T |
|
| Q |
310 |
ttaaatttggagttatttt |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6146038 |
ttaaatttggagttatttt |
6146020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University