View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8920_high_7 (Length: 256)

Name: NF8920_high_7
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8920_high_7
NF8920_high_7
[»] chr3 (2 HSPs)
chr3 (48-241)||(49124225-49124418)
chr3 (1-55)||(49124117-49124171)
[»] chr8 (1 HSPs)
chr8 (149-217)||(30341281-30341349)
[»] chr6 (2 HSPs)
chr6 (149-197)||(11683218-11683266)
chr6 (149-218)||(18988416-18988485)
[»] chr5 (1 HSPs)
chr5 (149-218)||(23917039-23917108)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 49124225 - 49124418
Alignment:
Q  48 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124225 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 49124324  T
Q  148 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagtttagattttctttagttgaaagt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49124325 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaagaaagtttagattttctttagttgaaagt 49124418  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49124117 - 49124171
Alignment:
Q  1 tcaaagaagaatgtaaatatgttaagtgtgttaacatagattttaatattcataa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124117 tcaaagaagaatgtaaatatgttaagtgtgttaacatagattttaatattcataa 49124171  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 30341349 - 30341281
Alignment:
Q  149 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaag 217  Q
    |||||||||||| |||||| |||||||||| ||||| ||||||| |||| |||||||||| || |||||    
T  30341349 tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaag 30341281  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
Q  149 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc 197  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  11683218 tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc 11683266  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 18988416 - 18988485
Alignment:
Q  149 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt 218  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| |||||||||| || ||||||    
T  18988416 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt 18988485  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 23917108 - 23917039
Alignment:
Q  149 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt 218  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| |||||||||| || ||||||    
T  23917108 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt 23917039  T

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