View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8920_low_1 (Length: 934)
Name: NF8920_low_1
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 402 - 920
Target Start/End: Original strand, 8985553 - 8986079
Alignment:
| Q |
402 |
aaaaatcacgtttgattttaaaaaagtcttgaaattaaacttgtttcataatttaaaatacttagaatgtaaataatctgcttcttgagttggaacaagg |
501 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8985553 |
aaaaatcacgtttgattttaaaaatgtcttgaaattaaacttgtttcataaattaaaatacttagaatgtaaataatctgcttcttgagttggaacaagg |
8985652 |
T |
|
| Q |
502 |
gggatatagcgatatagcagcgtgtggaagcctttttcgtaatttagatggacggtagatcaaaggttacataaaaaagattggcttgtttgatgccnnn |
601 |
Q |
| |
|
|| | ||||||||||||||||||||| ||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8985653 |
ggaa-atagcgatatagcagcgtgtg-aagccttttacgtaatttagatgggcgatggatcaaaggttacataaaaaagattggcttgtttgatgccctt |
8985750 |
T |
|
| Q |
602 |
nnnn-ctgtatcctttagagtatatggaagcaaagaaataatatgatttgga--gtgataaagttaatgaaaccaatgtggtggacagagcaaaacatat |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8985751 |
tttttctgtatcctttagagtatatggaagcaaagaaataatatgatttggaaagtgataaagttaatgaagccaatgtggtggacagagcaaaacatat |
8985850 |
T |
|
| Q |
699 |
gcttgaccaatggttggcaactcaaatgg-----aattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaataagggata |
793 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
8985851 |
gcttgaccagtggttggcaactcaaatggtacacaattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaacaaatgata |
8985950 |
T |
|
| Q |
794 |
tttaaatgtaatgtagatgcatctttttccaaagaggataa-aaagttgggatcggtatgtgcattcc-agattatacatgaacttttgttttggctaga |
891 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
8985951 |
tttaaatgtaatgtagatgcatcctttttcaaagaggataacaaagttgggatcggtatgtgcattccaagattatacataaacttttgctttggctaga |
8986050 |
T |
|
| Q |
892 |
acataatggtttagtccaatctgtgatgt |
920 |
Q |
| |
|
||||||||||||||| |||| |||||||| |
|
|
| T |
8986051 |
acataatggtttagttcaatttgtgatgt |
8986079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 8979474 - 8979862
Alignment:
| Q |
19 |
ataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979474 |
ataccctttggagctggtcgtagaatttgtcctggcatgtctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattgga |
8979573 |
T |
|
| Q |
119 |
aattgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccc |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979574 |
aattgccacaaggtttagaaaaggaagatattgataccgaaatgttgccagggatcactcaacacaagaagaatcctctttaccttgttcccaatatccc |
8979673 |
T |
|
| Q |
219 |
tatttagatgtatccctttatgttaactttgttagtttcatgtttaatatactgtttattaagctttttatgttgctctactatttgaatttgaaaaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979674 |
tatttagatgtatccctttatgttaactttgttagtttcatgtttaatatactgtttattaagctttttatgttgctctactatttgaatttgaaaaaag |
8979773 |
T |
|
| Q |
319 |
agaaaatcagttactttgaatttgtaatacaagaagaatcctctttgaatttgtaaagtggtcgaatgtaaatgatttgaataaaaaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979774 |
agaaaatcagttactttgaatttgtaatacaagaagaatcatctttgaatttgtaaagtggtcgaatgtaaatgatttgaataaaaaat |
8979862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 9000136 - 8999929
Alignment:
| Q |
19 |
ataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
9000136 |
ataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcctcattggaacttatccttgccaatcttctttattcatttgattgga |
9000037 |
T |
|
| Q |
119 |
aattgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccc |
218 |
Q |
| |
|
|||||||||| || | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
9000036 |
aattgccacatggaacagtaaaggaagatattgatactgaaatgttgccagggatcactcaacacaagaagaatcctctttgccttgttgccaagatccc |
8999937 |
T |
|
| Q |
219 |
tatttaga |
226 |
Q |
| |
|
||| |||| |
|
|
| T |
8999936 |
tatgtaga |
8999929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 9030988 - 9031258
Alignment:
| Q |
19 |
ataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattgga |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | || ||||||||||| |||||| ||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
9030988 |
ataccctttggagctggccgtagaatttgccccggcttacccatggcagttgcctcattgaaacttatccttgccaatcttctttattcatttgattgga |
9031087 |
T |
|
| Q |
119 |
aattgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccc |
218 |
Q |
| |
|
|||| ||| | || |||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| ||||||| | || ||||| |
|
|
| T |
9031088 |
aattaccagatgggttggtaaaggaagatattgatacatcaatgctgccagggatcactcaacacaagaagaatcctctttgccttgttgctaagatccc |
9031187 |
T |
|
| Q |
219 |
tatttagatgtatccctttat-gttaactttgttagtttcatgtttaatatactgtttattaagctttttat |
289 |
Q |
| |
|
||| |||||| |||||||||| || ||| |||| ||||| |||||| |||| ||||||| ||||||||||| |
|
|
| T |
9031188 |
tatgtagatgcatccctttatagtatactatgttggtttcttgtttattata-tgtttatcaagctttttat |
9031258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 8955138 - 8955376
Alignment:
| Q |
19 |
ataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||| | || || ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
8955138 |
ataccctttggagctggtcgtagaatttgccccggtatacctatggcaatcgcctcgttggaacttatccttgcaaatcttctctattcatttgattgga |
8955237 |
T |
|
| Q |
119 |
aattgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccc |
218 |
Q |
| |
|
|| ||| | || |||| ||| |||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| | |||| ||||| |
|
|
| T |
8955238 |
gcttaccagatgggttggtaaaagaagatgttgatacagaaatgctgccagggatcactcaacacaagaagaatcctctttaccttatagccaagatccc |
8955337 |
T |
|
| Q |
219 |
tatttagatgtatccctttatgttaactttgttagtttc |
257 |
Q |
| |
|
|| ||||| |||||||||| |||||| |||| ||||| |
|
|
| T |
8955338 |
taagtagatacatccctttatattaactatgttggtttc |
8955376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 8929369 - 8929167
Alignment:
| Q |
25 |
tttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgc |
124 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || | ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
8929369 |
tttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttgctaatcttctctattcatttgattgggaattac |
8929270 |
T |
|
| Q |
125 |
cacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctattta |
224 |
Q |
| |
|
|||| || |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | |||||| |||| ||||||| || |
|
|
| T |
8929269 |
cacatgggttggtaaaggaagatattgatacagaaatgttgccagggatcactcaacacaagaagaatcatctctgccttgtagccaaagtccctatgta |
8929170 |
T |
|
| Q |
225 |
gat |
227 |
Q |
| |
|
||| |
|
|
| T |
8929169 |
gat |
8929167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 8966220 - 8965957
Alignment:
| Q |
25 |
tttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgc |
124 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||| |||||||||| | ||||| ||||||||||||||||| ||||||||||||||||| || | |
|
|
| T |
8966220 |
tttggagcaggtcgtagaatttgtccaggtatatctatgggagttgcatcagtagaactgatccttgctaatcttctttattcttttgattggaagttac |
8966121 |
T |
|
| Q |
125 |
cacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctattta |
224 |
Q |
| |
|
|||| || |||| |||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||| | || ||| |||| || |||| || |
|
|
| T |
8966120 |
cacatggattggtaaaggaagatattgatactgaaacgttgcctgggatcactcaacacaagaagaatcctctctgtctggttgccaagattactatgta |
8966021 |
T |
|
| Q |
225 |
gatgtatccctttatgttaactttgttagtttcatgtttaatatac--tgtttattaagcttttt |
287 |
Q |
| |
|
||| |||||||||| | |||| | |||||||| ||||| |||| | |||||||||| |||||| |
|
|
| T |
8966020 |
gattcatccctttatttcaactct-ttagtttcttgtttgatatgctatgtttattaaacttttt |
8965957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 8900545 - 8900375
Alignment:
| Q |
22 |
ccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaat |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| || || ||||||||| ||| |
|
|
| T |
8900545 |
ccctttggagccggtcgtagaatttgcccaggtatgtctatggcagttgcatcattggaagttatccttgcaaatcttctatactcctttgattgggaat |
8900446 |
T |
|
| Q |
122 |
tgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaat |
192 |
Q |
| |
|
| ||| | ||| ||| |||||||||||||||||| |||| || |||||| ||||||| |||||||||||| |
|
|
| T |
8900445 |
taccagatggtatggtaaaggaagatattgatactgaaaggtggccaggactcactcaacacaagaagaat |
8900375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 8914447 - 8914280
Alignment:
| Q |
25 |
tttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgc |
124 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||| | |||||||| ||||| ||||||||| |||| | |
|
|
| T |
8914447 |
tttggagccggtcgtagaatttgtccaggtatgtctatggcagttgcatcactcgaacttatcctttccaatcttctatattcctttgattgggaattac |
8914348 |
T |
|
| Q |
125 |
cacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaat |
192 |
Q |
| |
|
|| | || || |||||||||||||||||| |||| || |||||| ||||||| |||||||||||| |
|
|
| T |
8914347 |
cagatggcctgataaaggaagatattgatactgaaaggtggccaggactcactcaacacaagaagaat |
8914280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 9014008 - 9014181
Alignment:
| Q |
96 |
tcttctctattcttttgattggaaattgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcct |
195 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9014008 |
tcttctttattcatttaattggaaattgccacatggaacactaaagaaagatattgatactgaaatgttgccagggatcactcaacacaagaagaatcct |
9014107 |
T |
|
| Q |
196 |
ctttaccttgttcccaatatccctatttagatgtat-ccctttatgttaactttgttagtttcatgtttaatat |
268 |
Q |
| |
|
|||| ||||||| |||| |||||||| |||| | || ||||||| | ||| |||| |||||||||||||||| |
|
|
| T |
9014108 |
ctttgccttgttgccaagatccctatgtagacgcatgacctttatcgtgactatgttggtttcatgtttaatat |
9014181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 20074004 - 20073834
Alignment:
| Q |
22 |
ccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaat |
121 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||| ||| |
|
|
| T |
20074004 |
ccctttggagccggtcgtagaatttgtccaggtatgtctatggcagttgcatcactcgaacttatccttgcaaatcttctatattcctttgattgggaat |
20073905 |
T |
|
| Q |
122 |
tgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaat |
192 |
Q |
| |
|
| ||| | ||| | | |||||||||||||||||| |||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
20073904 |
taccagatggtctagtaaaggaagatattgatactgaaaggttgccaggactcactcagcacaaaaagaat |
20073834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 9400242 - 9400060
Alignment:
| Q |
22 |
ccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaat |
121 |
Q |
| |
|
||||||||| |||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||| ||| |
|
|
| T |
9400242 |
ccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaatatcctctattcctttgattgggaat |
9400143 |
T |
|
| Q |
122 |
tgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttacctt |
204 |
Q |
| |
|
||||||| || |||| ||||||||| ||||| |||| |||||||||||| |||| ||||||||||| | ||||| |||| |
|
|
| T |
9400142 |
tgccacatgggttggttaaggaagatgttgattttgaaaggttgccagggattgctcaacacaagaagaaccatctttgcctt |
9400060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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