View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8920_low_11 (Length: 307)
Name: NF8920_low_11
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 784738 - 784438
Alignment:
| Q |
1 |
ttcggatcattatagtataatctaagtcgaatcgattggtaaattgatggattctcaattcaattggttgaatcaatatattcgatccaatttttaaaac |
100 |
Q |
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| T |
784738 |
ttcggatcattatagtataatctaagtcgaatcgattggtaaattgatggattctcaatttaattggttgaatcaatatattcgatccaatttttaaaac |
784639 |
T |
|
| Q |
101 |
atggattcaagttattcaaatgctaactaagatgaatcttgcgtacgnnnnnnnnnnnnnnnnnnnnnnnntctacgttatgtctcataaatttttcaat |
200 |
Q |
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| T |
784638 |
atggattcaagttattcaaatgctaattaagatgaatcttgcgtacgaaaaaaaatgttgaaatggaaaaatctacgttatgtctcataaatttttcaat |
784539 |
T |
|
| Q |
201 |
gaagtttagacatcactaatcacatgaaattttgtaccaaaaacatgtaaa-caaaaatatcaaaataattaaatttgattaatattttattcacaggtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
784538 |
gaagtttagacatcactaatcacatgaaattttgtaccaataacatgtaaaccaaaaatatcaaaataattaaatttgattaatattttattcacaggtt |
784439 |
T |
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| Q |
300 |
c |
300 |
Q |
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| |
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| T |
784438 |
c |
784438 |
T |
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