View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8920_low_13 (Length: 293)
Name: NF8920_low_13
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 7713797 - 7714061
Alignment:
| Q |
1 |
ccaaactctgctggaagcgtacctgaaagaccccagccacggccgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagttcc |
100 |
Q |
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|||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7713797 |
ccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcggccaggataaggtctgccgcaacctacgaagttcc |
7713896 |
T |
|
| Q |
101 |
agtcacaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
7713897 |
agtcacaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgtt |
7713996 |
T |
|
| Q |
201 |
gcagaagaagtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgtta |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7713997 |
gcagaagaagtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagaagagtgtta |
7714061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 7699452 - 7699726
Alignment:
| Q |
1 |
ccaaactctgctggaagcgtacctgaaagaccccagccacggccgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagttcc |
100 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7699452 |
ccaaactccgctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagctcc |
7699551 |
T |
|
| Q |
101 |
agtcacaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagcgtt |
200 |
Q |
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||||||||||||| |||||||||||||||||||| || ||||| || || || || ||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
7699552 |
agtcacaacattcggtgttgttgtcccagtcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgtt |
7699651 |
T |
|
| Q |
201 |
gcagaagaagtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtag |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7699652 |
gcagaagaagtcatcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtggagtag |
7699726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 7727314 - 7727594
Alignment:
| Q |
1 |
ccaaactctgctggaagcgtacctgaaagaccccagccacggccgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagttcc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||| || ||||||||| ||| |
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| T |
7727314 |
ccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttgccacacccgacgaagctcc |
7727413 |
T |
|
| Q |
101 |
agtc---acaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagc |
197 |
Q |
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|||| |||||| || || |||||||||| ||| || |||||||| |||||||| ||||||||||| ||||||||||| | ||||||||| | || |
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| T |
7727414 |
agtcgctacaacagtctgtactgttgtcccaatcggagaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggc |
7727513 |
T |
|
| Q |
198 |
gttgcagaagaagt---catcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtag |
275 |
Q |
| |
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|||||| |||| | ||||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7727514 |
attgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaagagaagtgttaagtggagtag |
7727594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 7731474 - 7731754
Alignment:
| Q |
1 |
ccaaactctgctggaagcgtacctgaaagaccccagccacggccgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagttcc |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| | || || ||||||||| ||| |
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| T |
7731474 |
ccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctcc |
7731573 |
T |
|
| Q |
101 |
agtc---acaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagc |
197 |
Q |
| |
|
|||| |||||| || || ||||||||| ||| ||| |||||||| |||||||| ||||||||||| ||||||||||||| ||||||||| | || |
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| T |
7731574 |
agtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggc |
7731673 |
T |
|
| Q |
198 |
gttgcagaagaagt---catcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtag |
275 |
Q |
| |
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||||||| |||| | ||||| || |||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
7731674 |
gttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtag |
7731754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 7739632 - 7739912
Alignment:
| Q |
1 |
ccaaactctgctggaagcgtacctgaaagaccccagccacggccgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagttcc |
100 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| | || || ||||||||| ||| |
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| T |
7739632 |
ccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctcc |
7739731 |
T |
|
| Q |
101 |
agtc---acaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctaattttgaggagggcggctttgtcgtcagc |
197 |
Q |
| |
|
|||| |||||| || || ||||||||| ||| ||| |||||||| |||||||| ||||||||||| ||||||||||||| ||||||||| | || |
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| T |
7739732 |
agtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggc |
7739831 |
T |
|
| Q |
198 |
gttgcagaagaagt---catcacttgcgtttgatttggagaagtagatggaagaaaggaagagaagtgttaagtgcagtag |
275 |
Q |
| |
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||||||| |||| | ||||| || |||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
7739832 |
gttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtag |
7739912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 12907863 - 12907817
Alignment:
| Q |
142 |
ccgttagggccgccaaaatggtctctaattttgaggagggcggcttt |
188 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| || ||||| |
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| T |
12907863 |
ccgttagggccgccgaaatggtctcttattttgaggagagcagcttt |
12907817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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