View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8920_low_14 (Length: 286)
Name: NF8920_low_14
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 41086001 - 41086269
Alignment:
| Q |
1 |
ttaagaatttggcgaaaacaacagccatatctatatcgcgggaaccattgttttggttttgctgatgatcttcatcgtcagcagagccataattcgcgga |
100 |
Q |
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| T |
41086001 |
ttaagaatttggcgaaaacaacagccatatctatatcgcgggaaccattgttttggttttgctgatgatcttcatcgtcagcagagccataattcgcgga |
41086100 |
T |
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| Q |
101 |
aagacggtcggcatgagaatttctgaccgcctttccacggcggtttttgcggcagccaccaccaacaggaacattccgaagagagccacctttggtccaa |
200 |
Q |
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| T |
41086101 |
aagacggtcagtctgagaatttctgaccgcctttccacgacggtttttgcggcagccaccaccaacaggaacattccgaagagagccacctttggtccaa |
41086200 |
T |
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| Q |
201 |
taacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgtagtaacagaatttg |
269 |
Q |
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| T |
41086201 |
taacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgtagtaacagaatttg |
41086269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 34976172 - 34976252
Alignment:
| Q |
189 |
cctttggtccaataacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgtagtaacagaatttg |
269 |
Q |
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| T |
34976172 |
cctttggtccaataccttctacaagtcttgcagaagtaccttggctgagagagactgtaattgttgtagtagcagaatttg |
34976252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 24878994 - 24878869
Alignment:
| Q |
143 |
gtttttgcggcagccaccaccaacaggaacattccgaagagagccacctttggtccaataacgtctacaacctttgcaaaaataccgtggctgggacaag |
242 |
Q |
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| T |
24878994 |
gttttttctgcagccaccaccaacaggaacatttctgagggatccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaag |
24878895 |
T |
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| Q |
243 |
ctgtaattgttgtagtaacagaattt |
268 |
Q |
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| T |
24878894 |
ctgtagttattgtagtagcagaattt |
24878869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 3945865 - 3945971
Alignment:
| Q |
156 |
ccaccaccaacaggaacattccgaagagagccacctttggtccaataacgtctacaacctttgcaaaaataccgtggctgggacaagctgtaattgttgt |
255 |
Q |
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| T |
3945865 |
ccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgt |
3945964 |
T |
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| Q |
256 |
agtaaca |
262 |
Q |
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| T |
3945965 |
agtaaca |
3945971 |
T |
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