View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8920_low_15 (Length: 279)

Name: NF8920_low_15
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8920_low_15
NF8920_low_15
[»] chr5 (10 HSPs)
chr5 (17-215)||(28784878-28785077)
chr5 (204-262)||(28784799-28784857)
chr5 (203-260)||(20202640-20202697)
chr5 (204-260)||(25898634-25898690)
chr5 (181-215)||(1173044-1173078)
chr5 (120-158)||(8688100-8688138)
chr5 (121-159)||(20887938-20887976)
chr5 (193-222)||(6702483-6702512)
chr5 (203-260)||(16100879-16100936)
chr5 (204-260)||(6427283-6427339)
[»] scaffold0223 (1 HSPs)
scaffold0223 (114-260)||(16114-16261)
[»] chr1 (19 HSPs)
chr1 (203-260)||(18844009-18844066)
chr1 (124-220)||(10308361-10308457)
chr1 (205-262)||(49597193-49597250)
chr1 (204-260)||(11012135-11012191)
chr1 (122-215)||(39222588-39222681)
chr1 (123-215)||(12926714-12926806)
chr1 (124-160)||(46923665-46923701)
chr1 (124-160)||(48569438-48569474)
chr1 (185-215)||(47983638-47983668)
chr1 (203-260)||(3660208-3660265)
chr1 (123-160)||(3872136-3872173)
chr1 (124-157)||(18169182-18169215)
chr1 (203-260)||(21482904-21482961)
chr1 (153-214)||(37708020-37708081)
chr1 (207-260)||(41871735-41871788)
chr1 (124-160)||(11435360-11435396)
chr1 (124-160)||(23943681-23943717)
chr1 (124-160)||(30308266-30308302)
chr1 (204-260)||(48566757-48566813)
[»] chr8 (13 HSPs)
chr8 (122-159)||(9512530-9512567)
chr8 (124-160)||(15743352-15743388)
chr8 (203-262)||(23542772-23542831)
chr8 (124-215)||(23542851-23542942)
chr8 (118-160)||(4412591-4412633)
chr8 (176-222)||(32074931-32074977)
chr8 (124-161)||(7130730-7130767)
chr8 (179-220)||(36701317-36701358)
chr8 (123-159)||(3194654-3194690)
chr8 (121-161)||(5076335-5076375)
chr8 (204-260)||(34471624-34471679)
chr8 (124-160)||(35161495-35161531)
chr8 (124-160)||(43693728-43693764)
[»] chr7 (12 HSPs)
chr7 (203-260)||(37524188-37524245)
chr7 (178-220)||(29714241-29714283)
chr7 (124-161)||(39476416-39476453)
chr7 (203-260)||(41219406-41219463)
chr7 (124-160)||(4035315-4035351)
chr7 (119-159)||(23943804-23943844)
chr7 (122-158)||(47441552-47441588)
chr7 (127-160)||(21153696-21153729)
chr7 (203-260)||(27874056-27874113)
chr7 (203-260)||(29714297-29714354)
chr7 (203-260)||(34354420-34354477)
chr7 (153-220)||(33802891-33802958)
[»] chr4 (19 HSPs)
chr4 (203-260)||(2777973-2778030)
chr4 (207-260)||(31936354-31936407)
chr4 (124-215)||(21713273-21713364)
chr4 (113-160)||(26973978-26974025)
chr4 (124-160)||(31825892-31825928)
chr4 (204-260)||(49065582-49065638)
chr4 (124-160)||(54703525-54703561)
chr4 (122-160)||(4674935-4674973)
chr4 (185-215)||(9958203-9958233)
chr4 (203-260)||(27761161-27761218)
chr4 (123-160)||(36047055-36047092)
chr4 (123-160)||(39834815-39834852)
chr4 (211-260)||(42039021-42039070)
chr4 (185-222)||(42118923-42118960)
chr4 (124-161)||(52032845-52032882)
chr4 (179-215)||(9958211-9958247)
chr4 (179-215)||(21058717-21058753)
chr4 (168-220)||(37694615-37694667)
chr4 (124-160)||(40361791-40361827)
[»] chr3 (8 HSPs)
chr3 (203-260)||(39415344-39415401)
chr3 (207-262)||(25574829-25574884)
chr3 (207-260)||(6755746-6755799)
chr3 (203-260)||(48086841-48086898)
chr3 (139-222)||(55480345-55480427)
chr3 (181-215)||(2182597-2182631)
chr3 (124-160)||(37280603-37280639)
chr3 (124-160)||(39417957-39417993)
[»] chr2 (9 HSPs)
chr2 (124-220)||(41192486-41192582)
chr2 (124-203)||(34620002-34620081)
chr2 (203-260)||(29908501-29908558)
chr2 (120-160)||(42242115-42242155)
chr2 (206-260)||(29132666-29132720)
chr2 (120-157)||(32733930-32733967)
chr2 (189-217)||(18206910-18206938)
chr2 (124-160)||(42882455-42882491)
chr2 (124-160)||(43837507-43837543)
[»] chr6 (7 HSPs)
chr6 (124-158)||(5741178-5741212)
chr6 (207-260)||(319227-319280)
chr6 (203-260)||(13312585-13312642)
chr6 (124-160)||(5741566-5741602)
chr6 (124-160)||(9521487-9521523)
chr6 (185-215)||(13312535-13312565)
chr6 (124-160)||(11598907-11598943)
[»] scaffold0861 (1 HSPs)
scaffold0861 (208-260)||(3756-3808)
[»] scaffold0010 (1 HSPs)
scaffold0010 (185-214)||(34769-34798)
[»] scaffold1212 (1 HSPs)
scaffold1212 (179-215)||(1802-1838)
[»] scaffold0007 (2 HSPs)
scaffold0007 (183-215)||(232447-232479)
scaffold0007 (123-155)||(256390-256422)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 28785077 - 28784878
Alignment:
Q  17 tgtgttgttaaatgagtttaacgaagggtgatgtatcaacaatagggccggcctaagcataaggttgcccaagccttgcgttaggccccaaaaaa-taat 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  28785077 tgtgttgttaaatgagtttaacggagggtgatgtatcaacaatagggccggcctaagcataaggttgcccaagccttgtgttaggccccaaaaaaataat 28784978  T
Q  116 tttattttgaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  28784977 tttattttgaattctgctcttcatcctgcactttttgctcgcgcccagctgattttcccaacatacccttgtgttaattaagttacgctgcgtgacttaa 28784878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 28784857 - 28784799
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 262  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28784857 tgcgtgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttggtc 28784799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 20202697 - 20202640
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||| |||| |||||    
T  20202697 ctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttgg 20202640  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 25898634 - 25898690
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||| |||||||| || ||||||| || |||| |||||||||||||||||||||    
T  25898634 tgcgtgatttaagtcatacaccactggcctaggcgtgagttaactcacgcacgttgg 25898690  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 1173078 - 1173044
Alignment:
Q  181 cccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||||||||||||||||| |||||||||||    
T  1173078 cccttgcgttagttaagtcacgcagcgtgacttaa 1173044  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 8688100 - 8688138
Alignment:
Q  120 ttttgaattctgctcttcaccctgcactttttgctcgcg 158  Q
    |||||||||||||||||||||||| || |||||||||||    
T  8688100 ttttgaattctgctcttcaccctgtacattttgctcgcg 8688138  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 20887976 - 20887938
Alignment:
Q  121 tttgaattctgctcttcaccctgcactttttgctcgcgc 159  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  20887976 tttgaattctgctctccaccctgcacattttgctcgcgc 20887938  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 6702512 - 6702483
Alignment:
Q  193 ttaagtcacgctgcgtgacttaagtcacac 222  Q
    ||||||||||||||||||||||||||||||    
T  6702512 ttaagtcacgctgcgtgacttaagtcacac 6702483  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 16100879 - 16100936
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||| | | ||| ||||||||||||||||||| |||||    
T  16100879 ctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaagttgg 16100936  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 6427283 - 6427339
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||||| | | ||||| ||  |||||||||||||||||||| ||||    
T  6427283 tgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcaccttgg 6427339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 260
Target Start/End: Complemental strand, 16261 - 16114
Alignment:
Q  114 attttattttgaattctgctcttcaccctgcac-tttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgact 212  Q
    ||||| |||||||||||||||||   ||  ||| |||||||||||||| ||||||||| || |  |||||| ||||| |||||||||||||| |||||||    
T  16261 attttcttttgaattctgctcttttaccaacacatttttgctcgcgcccagctgatttgccaattatacccctgcgtgagttaagtcacgctacgtgact 16162  T
Q  213 taagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||| | ||| ||| ||| ||||| ||||||||||||| |||||    
T  16161 taagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttgg 16114  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 18844066 - 18844009
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||    
T  18844066 ctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttgg 18844009  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 10308361 - 10308457
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 220  Q
    ||||||||||||||||||||||| |||||||||||||  ||  ||||||  || ||| || ||||| ||||||||||||| ||| ||||||| ||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcac 10308457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 49597193 - 49597250
Alignment:
Q  205 gcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 262  Q
    |||||||||||||||| | ||||||| ||  |||||||||||||||||||||||||||    
T  49597193 gcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtc 49597250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 11012135 - 11012191
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  11012135 tgcgtgagttaagtcgcacaccactggcctgggcgtgagttaactcacgcacgttgg 11012191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 39222588 - 39222681
Alignment:
Q  122 ttgaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||| ||||||||||||||||| |||||||||||||  || |   | || || ||  ||||||| |||||||||||||| |||||||||||    
T  39222588 ttgaattttgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaa 39222681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 12926714 - 12926806
Alignment:
Q  123 tgaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    |||||| ||||||||||||||||| |||||||| ||||  ||   |||||| || ||| || ||||| ||||||||||||| ||| |||||||    
T  12926714 tgaattttgctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaa 12926806  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 46923665 - 46923701
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46923665 gaattctgctcttcaccctgcacattttgctcgcgcc 46923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 48569474 - 48569438
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| |||||||||||||    
T  48569474 gaattctgctcttcaccctgcacattttgctcgcgcc 48569438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Complemental strand, 47983668 - 47983638
Alignment:
Q  185 tgcgttagttaagtcacgctgcgtgacttaa 215  Q
    |||||||||||||||||||||||||||||||    
T  47983668 tgcgttagttaagtcacgctgcgtgacttaa 47983638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 3660265 - 3660208
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||| ||| ||  |||||||||||||||||||| ||||    
T  3660265 ctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttgg 3660208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 3872136 - 3872173
Alignment:
Q  123 tgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  3872136 tgaattctgctcttccccctgcacttttcgctcgcgcc 3872173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 18169182 - 18169215
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgc 157  Q
    ||||||||||||||||||||||| ||||||||||    
T  18169182 gaattctgctcttcaccctgcacattttgctcgc 18169215  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 21482904 - 21482961
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||||| | ||  || ||||||||||||||||||||||    
T  21482904 ctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttgg 21482961  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 37708020 - 37708081
Alignment:
Q  153 ctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgactta 214  Q
    |||||||| | ||||||||   || ||||| |||||| ||||||||||||||||||||||||    
T  37708020 ctcgcgcccaactgattttttaaatatacctttgcgtgagttaagtcacgctgcgtgactta 37708081  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 41871735 - 41871788
Alignment:
Q  207 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||| || | ||||||| ||  |||||||||||||||||||||||||    
T  41871735 gtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgttgg 41871788  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 11435396 - 11435360
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||||||||||||||||||||||||||  ||||||||    
T  11435396 gaattctgctcttcaccctgcacttttcactcgcgcc 11435360  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 23943717 - 23943681
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  23943717 gaattctgctcttcaccctgcacattttgcttgcgcc 23943681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 30308266 - 30308302
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||||| |||||||||||||||| |||||||||||||    
T  30308266 gaattcagctcttcaccctgcacattttgctcgcgcc 30308302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 48566757 - 48566813
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||||| |   ||||| ||  |||||||||||||||||||||||||    
T  48566757 tgcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttgg 48566813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 9512567 - 9512530
Alignment:
Q  122 ttgaattctgctcttcaccctgcactttttgctcgcgc 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9512567 ttgaattctgctcttcaccctgcactttttgctcgcgc 9512530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 15743388 - 15743352
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgcc 15743352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 23542831 - 23542772
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 262  Q
    ||||||||||||| |||| | ||||||| ||  ||||||||||||||| |||||||||||    
T  23542831 ctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtc 23542772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 23542942 - 23542851
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||| |||||||||||| |||| ||| |||||||||  || |   |||| || ||||||| ||||||| |||||||| |||||||||||||    
T  23542942 gaattttgctcttcacccagcacatttcgctcgcgccctgcagccattcctaatataccctcgcgttaggtaagtcacactgcgtgacttaa 23542851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 4412591 - 4412633
Alignment:
Q  118 tattttgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||| |||| |||| |||||||||||||    
T  4412591 tattttgaattctgctctttacccagcacattttgctcgcgcc 4412633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 32074931 - 32074977
Alignment:
Q  176 acatacccttgcgttagttaagtcacgctgcgtgacttaagtcacac 222  Q
    |||||||| ||||||| |||| ||||||||||||| |||||||||||    
T  32074931 acatacccatgcgttacttaactcacgctgcgtgagttaagtcacac 32074977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 7130767 - 7130730
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcct 161  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7130767 gaatcctgctcttcaccctgcacttttcgctcgcgcct 7130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 36701317 - 36701358
Alignment:
Q  179 tacccttgcgttagttaagtcacgctgcgtgacttaagtcac 220  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||    
T  36701317 tacccatgcgttagttaagtcacgcagcgcgacttaagtcac 36701358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 3194690 - 3194654
Alignment:
Q  123 tgaattctgctcttcaccctgcactttttgctcgcgc 159  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3194690 tgaattctgctctttcccctgcactttttgctcgcgc 3194654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 5076375 - 5076335
Alignment:
Q  121 tttgaattctgctcttcaccctgcactttttgctcgcgcct 161  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  5076375 tttgaattctgctctccaccctgcacatgttgctcgcgcct 5076335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 34471679 - 34471624
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||||| | ||| ||| ||  |||||||||||||||||||||||||    
T  34471679 tgcgtgacttaagtcacgcaccattgg-ctatgcgcgagttaactcacgcacgttgg 34471624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 35161495 - 35161531
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  35161495 gaattctactcttcaccctgcacattttgctcgcgcc 35161531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 43693764 - 43693728
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgcc 43693728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 37524245 - 37524188
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||    
T  37524245 ctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttgg 37524188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 29714241 - 29714283
Alignment:
Q  178 atacccttgcgttagttaagtcacgctgcgtgacttaagtcac 220  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  29714241 atacccatgcgttagttaagtcacgctgcgtgacttaaatcac 29714283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 39476416 - 39476453
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcct 161  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39476416 gaattctgctcttcaccctgcacattttgctcgcgcct 39476453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 41219463 - 41219406
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| |  |||||| ||  |||||||||||||||||||||||||    
T  41219463 ctgcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttgg 41219406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 4035351 - 4035315
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4035351 gaattctgctcttcaccctgcacattttgctcgcgcc 4035315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 23943844 - 23943804
Alignment:
Q  119 attttgaattctgctcttcaccctgcactttttgctcgcgc 159  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  23943844 atttggaattctgctcttcaccctgcacattttgctcgcgc 23943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 47441552 - 47441588
Alignment:
Q  122 ttgaattctgctcttcaccctgcactttttgctcgcg 158  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47441552 ttgaattatgctcttcaccctgcactttttgctcgcg 47441588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 21153696 - 21153729
Alignment:
Q  127 ttctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||| ||||||||||||||||||||||    
T  21153696 ttctgctcttccccctgcactttttgctcgcgcc 21153729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 27874113 - 27874056
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||| ||| | ||||||  ||  |||||||||||||||||||||||||    
T  27874113 ctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgttgg 27874056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 29714297 - 29714354
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||  | ||||||   |||||||||||||||||||||| |||||    
T  29714297 ctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcaggttgg 29714354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 34354477 - 34354420
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||||||   ||||||| ||  |||||||||||||||| ||||||||    
T  34354477 ctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcacacacgttgg 34354420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 33802891 - 33802958
Alignment:
Q  153 ctcgcgcctagc-tgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 220  Q
    |||||||||||| ||||||||  || |||||| ||||| ||||||||||||| ||||||||||| ||||    
T  33802891 ctcgcgcctagcatgattttca-aatatacccctgcgtgagttaagtcacgcagcgtgacttaactcac 33802958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 2777973 - 2778030
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||| ||||||||||||| ||||||| ||| ||||||||||||||||||| |||||    
T  2777973 ctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgcaagttgg 2778030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 31936407 - 31936354
Alignment:
Q  207 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  31936407 gtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggttgg 31936354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 21713364 - 21713273
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||||||||||||||||| |||||||||||||  || |   | || || || |||||||| |||||||||||||| |||||| ||||    
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgatttaa 21713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 26974025 - 26973978
Alignment:
Q  113 aattttattttgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  26974025 aattttattttgaattctgctcttctccctgcacttttcgctcacgcc 26973978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 31825928 - 31825892
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgcc 31825892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 49065638 - 49065582
Alignment:
Q  204 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||||| | ||||||| ||  |||||||||||||||||||| ||||    
T  49065638 tgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcaccttgg 49065582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 54703525 - 54703561
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| |||||||||||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgcc 54703561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 4674935 - 4674973
Alignment:
Q  122 ttgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  4674935 ttgaatcctgctcttcaccctgcacttttcgctcgcgcc 4674973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 9958203 - 9958233
Alignment:
Q  185 tgcgttagttaagtcacgctgcgtgacttaa 215  Q
    |||||||||||||||||||||||||||||||    
T  9958203 tgcgttagttaagtcacgctgcgtgacttaa 9958233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 27761218 - 27761161
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||||| | ||  |||||||||||||||| ||||||||    
T  27761218 ctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgttgg 27761161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 36047092 - 36047055
Alignment:
Q  123 tgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  36047092 tgaattctgctcttcaccctgcacattttgcttgcgcc 36047055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 39834852 - 39834815
Alignment:
Q  123 tgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  39834852 tgaattctgctcttccccctgcacttttcgctcgcgcc 39834815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 42039021 - 42039070
Alignment:
Q  211 cttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||| ||||| | ||||||| ||| |||||||||||||||||||||||||    
T  42039021 cttatgtcacgcaccactggcctgtgcgcgagttaactcacgcacgttgg 42039070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 42118923 - 42118960
Alignment:
Q  185 tgcgttagttaagtcacgctgcgtgacttaagtcacac 222  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  42118923 tgcgtgagttaagtcacgctgcgtgacttaactcacac 42118960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 52032882 - 52032845
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcct 161  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  52032882 gaattctgctcttcaccctgcacattttactcgcgcct 52032845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 9958247 - 9958211
Alignment:
Q  179 tacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    |||| |||||||||||||||||||| |||||||||||    
T  9958247 taccattgcgttagttaagtcacgcagcgtgacttaa 9958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 21058753 - 21058717
Alignment:
Q  179 tacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||||  |||||||||||||||||||||||||    
T  21058753 tacccttgcgcaagttaagtcacgctgcgtgacttaa 21058717  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 37694667 - 37694615
Alignment:
Q  168 ttttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 220  Q
    |||||| || |||||| ||||| ||||||||||||| ||||||||||| ||||    
T  37694667 ttttccaaatatacccctgcgtgagttaagtcacgcagcgtgacttaactcac 37694615  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 40361827 - 40361791
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40361827 gaattcttctcttcaccctgcacttttcgctcgcgcc 40361791  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 39415344 - 39415401
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||||||| ||| ||| |||||||||||||||||||||    
T  39415344 ctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttgg 39415401  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 25574829 - 25574884
Alignment:
Q  207 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 262  Q
    |||||||||||||| | ||||||| ||  |||||||||||||||||||||||||||    
T  25574829 gtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtc 25574884  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 6755799 - 6755746
Alignment:
Q  207 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||| |||||||  || ||||||||||||||||||| |||||    
T  6755799 gtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagttgg 6755746  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 48086841 - 48086898
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||| ||||||||||||| | ||||||| ||  |||||||||||||||||||||||||    
T  48086841 ctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttgg 48086898  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 55480345 - 55480427
Alignment:
Q  139 ccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcacac 222  Q
    |||||||||||| ||||||| | |||||||||  | || ||||| |||||| ||||||||||||| |||||| |||| ||||||    
T  55480345 ccctgcacttttcgctcgcgtccagctgatttgtcaaatatacc-ttgcgtgagttaagtcacgcagcgtgaattaactcacac 55480427  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 2182631 - 2182597
Alignment:
Q  181 cccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||| |||||||||||||||||||||||||    
T  2182631 cccttgcgtaagttaagtcacgctgcgtgacttaa 2182597  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 37280603 - 37280639
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||| || ||||||||||    
T  37280603 gaattctgctcttcaccctgcacattctgctcgcgcc 37280639  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 39417993 - 39417957
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  39417993 gaattctgctcttcaccctccacattttgctcgcgcc 39417957  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 41192582 - 41192486
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 220  Q
    ||||||||||||||||||||||| ||||| |||||||  ||   |||||| || ||| || ||||| ||||||||||||| ||| ||||||| ||||    
T  41192582 gaattctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcac 41192486  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 34620081 - 34620002
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgc 203  Q
    ||||||||||||||||||||||| |||||||||||||  ||   |||||| || ||| || ||||| |||||||||||||    
T  34620081 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgc 34620002  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 29908501 - 29908558
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||||||| | ||||||| ||  ||||||||||||||| |||||||||    
T  29908501 ctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgttgg 29908558  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 42242155 - 42242115
Alignment:
Q  120 ttttgaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  42242155 ttttgaatactgctcttcaccctgcacattttgctcgcgcc 42242115  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 29132720 - 29132666
Alignment:
Q  206 cgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||| | |||| || ||  |||||||||||||||||||||||||    
T  29132720 cgtgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgttgg 29132666  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 32733930 - 32733967
Alignment:
Q  120 ttttgaattctgctcttcaccctgcactttttgctcgc 157  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  32733930 ttttgaattctgctcttcaccatgcacattttgctcgc 32733967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 18206938 - 18206910
Alignment:
Q  189 ttagttaagtcacgctgcgtgacttaagt 217  Q
    |||||||||||||||||||||||||||||    
T  18206938 ttagttaagtcacgctgcgtgacttaagt 18206910  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 42882455 - 42882491
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgcc 42882491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 43837507 - 43837543
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||| |||||||||||||||||| |||||||||||||    
T  43837507 gaatactgctcttcaccctgcacattttgctcgcgcc 43837543  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 5741178 - 5741212
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcg 158  Q
    |||||||||||||||||||||||||||||||||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcg 5741212  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 319227 - 319280
Alignment:
Q  207 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    |||||||||||||  | ||||||||||  |||||||||||||||||||||||||    
T  319227 gtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgg 319280  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 13312585 - 13312642
Alignment:
Q  203 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||||||   ||||||| |||||| |||||||||||||| |||||||    
T  13312585 ctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgttgg 13312642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 5741602 - 5741566
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgcc 5741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 9521523 - 9521487
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9521523 gaattctgctcttccccctgcactttttgctcgcgcc 9521487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 13312535 - 13312565
Alignment:
Q  185 tgcgttagttaagtcacgctgcgtgacttaa 215  Q
    |||||||||||||||||||||||||||||||    
T  13312535 tgcgttagttaagtcacgctgcgtgacttaa 13312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 11598907 - 11598943
Alignment:
Q  124 gaattctgctcttcaccctgcactttttgctcgcgcc 160  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  11598907 gaattttgctcttcaccctgcacattttgctcgcgcc 11598943  T

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Target: scaffold0861 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 3808 - 3756
Alignment:
Q  208 tgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 260  Q
    ||||||||||||||| ||||||| ||  |||||||||||||||||||| ||||    
T  3808 tgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttgg 3756  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 214
Target Start/End: Original strand, 34769 - 34798
Alignment:
Q  185 tgcgttagttaagtcacgctgcgtgactta 214  Q
    ||||||||||||||||||||||||||||||    
T  34769 tgcgttagttaagtcacgctgcgtgactta 34798  T

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Target: scaffold1212 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 1838 - 1802
Alignment:
Q  179 tacccttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||||  |||||||||||||||||||||||||    
T  1838 tacccttgcgcaagttaagtcacgctgcgtgacttaa 1802  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 232479 - 232447
Alignment:
Q  183 cttgcgttagttaagtcacgctgcgtgacttaa 215  Q
    ||||||||||||||||||||| |||||||||||    
T  232479 cttgcgttagttaagtcacgcagcgtgacttaa 232447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 256390 - 256422
Alignment:
Q  123 tgaattctgctcttcaccctgcactttttgctc 155  Q
    |||||||||||||||||||||||| ||||||||    
T  256390 tgaattctgctcttcaccctgcacattttgctc 256422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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