View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8920_low_2 (Length: 680)
Name: NF8920_low_2
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 24 - 559
Target Start/End: Complemental strand, 785360 - 784825
Alignment:
| Q |
24 |
tttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttctaattttccaatacaaaaagaatg |
123 |
Q |
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| T |
785360 |
tttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttctaattttccaatacaaaaagaatg |
785261 |
T |
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| Q |
124 |
aaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatgcataaagatgcaatataaagtt |
223 |
Q |
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| T |
785260 |
aaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatgcataaagatgcaatataaagtt |
785161 |
T |
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| Q |
224 |
gtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaatatgttgcttattattttatgggaaatgctaat |
323 |
Q |
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| T |
785160 |
gtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaaaatgttggttattattttatgggaaatgctaat |
785061 |
T |
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| Q |
324 |
caaatatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcatttgttcattcataaggtaaaggatg |
423 |
Q |
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| T |
785060 |
caagtatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcagttgttcattcataaggtaaaggata |
784961 |
T |
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| Q |
424 |
cattaataatgttttagaaatctgacatgagatcgagaagtgaaatatttatgttatggttcaagcactttatggttataatagatggttgaactatgtg |
523 |
Q |
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| T |
784960 |
cattaataatgttttagaaatctgacatgagatcgagaagtgaaatatttatgttatggttcaagcactttatggttataatagatggttgaactatgtg |
784861 |
T |
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| Q |
524 |
tgaacaatataaatatggtttgcacttgatggggag |
559 |
Q |
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| T |
784860 |
tgaacaatataaatatggtttgcacttgatggggag |
784825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 597 - 669
Target Start/End: Complemental strand, 784787 - 784715
Alignment:
| Q |
597 |
ttaacttggttgaactatgtgttgttcaatctcgattcaatcaagttctttcggatcattatagtataatcta |
669 |
Q |
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| T |
784787 |
ttaacttggttgaactatgtgttgttcaatctcgattcaatcaagttctttcggatcattatagtataatcta |
784715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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