View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8920_low_21 (Length: 256)
Name: NF8920_low_21
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 49124225 - 49124418
Alignment:
| Q |
48 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
147 |
Q |
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| T |
49124225 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
49124324 |
T |
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| Q |
148 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagtttagattttctttagttgaaagt |
241 |
Q |
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| T |
49124325 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaagaaagtttagattttctttagttgaaagt |
49124418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49124117 - 49124171
Alignment:
| Q |
1 |
tcaaagaagaatgtaaatatgttaagtgtgttaacatagattttaatattcataa |
55 |
Q |
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| T |
49124117 |
tcaaagaagaatgtaaatatgttaagtgtgttaacatagattttaatattcataa |
49124171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 30341349 - 30341281
Alignment:
| Q |
149 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaag |
217 |
Q |
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| T |
30341349 |
tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaag |
30341281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
| Q |
149 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc |
197 |
Q |
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| T |
11683218 |
tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc |
11683266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 18988416 - 18988485
Alignment:
| Q |
149 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt |
218 |
Q |
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| T |
18988416 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt |
18988485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 23917108 - 23917039
Alignment:
| Q |
149 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt |
218 |
Q |
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| T |
23917108 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt |
23917039 |
T |
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