View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8920_low_22 (Length: 248)
Name: NF8920_low_22
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 35444401 - 35444557
Alignment:
| Q |
1 |
taacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgcgaagtaaaataaagtgcagttaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35444401 |
taacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgtgaagtaaaataaagtgcagttaatcc |
35444500 |
T |
|
| Q |
101 |
actcgaaaaacatataggttggagagcgtataaggtgcattaccatgttattcaata |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
35444501 |
actcgaaaaacatataggttggagagcgtataaggtgcattactatgttatttaata |
35444557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
149 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University