View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8920_low_3 (Length: 590)

Name: NF8920_low_3
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8920_low_3
NF8920_low_3
[»] chr4 (3 HSPs)
chr4 (19-577)||(20370449-20371006)
chr4 (479-576)||(20390346-20390443)
chr4 (480-531)||(20377911-20377962)


Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 20371006 - 20370449
Alignment:
Q  19 acattagtccaacccctttgatgcccaacaaagacattatgcatagctctgtctagtttacaaacaacccacatatgaatagaacgcgagaacccaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20371006 acattagtccaacccctttgatgcccaacaaagacattatgcatagctctgtctagtttaccaacaacccacatatgaatagaacgcgagaacccaaaaa 20370907  T
Q  119 cttgaactctagcatttctatcatgggaaacataaacatcagatagaatgccacatgtctcaaagccttttatcaactcccacatactgcaactgttttg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  20370906 cttgaactctagcatttctatcatgggaaacataaacatcagatagaatgccacatgtctcaaagccttttatcaactcc-acatacaacaactgttttg 20370808  T
Q  219 gaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgcgagtaacataattatgtcgccagtggggtaatgttaattgtctccttacgcgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20370807 gaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgcgagtaacataattatgtcgccagtggggtaatgttaattgtttccttacgcgt 20370708  T
Q  319 ggaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgctgaaccttgtttctgcttcagacgtcatcgcgatggctctcagatcgactcca 418  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||    
T  20370707 gaaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgctgaaccttgtttccgcttcaaacgtcatcgcgatggctctcagaccgacccca 20370608  T
Q  419 tgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctatacctccttgccaataattaatttcattttcgtaatcctcaagattccatcttt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20370607 tgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctatacctccttgccaataattaatttcatttttgtaatcctcaagattccatcttt 20370508  T
Q  519 cacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataatc 577  Q
    |||||||||||||||||||||||||||       |||||||||||||||||| ||||||    
T  20370507 cacaaatatatatcaattcaaaataacaaaaaaatcggatacaagtattcaggataatc 20370449  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 479 - 576
Target Start/End: Complemental strand, 20390443 - 20390346
Alignment:
Q  479 taattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataat 576  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||       |||||||||| |||||| ||||||    
T  20390443 taattaatttcattttcgtaatcctttagattccatctttcactaatatatatcaattcaaaataacaagaaaatcggatacaactattcacaataat 20390346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 20377962 - 20377911
Alignment:
Q  480 aattaatttcattttcgtaatcctcaagattccatctttcacaaatatatat 531  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  20377962 aattaatttcattttggtaatcatcaagattccatctttcactaatatatat 20377911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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