View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8920_low_4 (Length: 515)

Name: NF8920_low_4
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8920_low_4
NF8920_low_4
[»] chr1 (2 HSPs)
chr1 (13-498)||(4355365-4355850)
chr1 (13-498)||(4675062-4675547)
[»] chr3 (3 HSPs)
chr3 (41-494)||(38248980-38249430)
chr3 (97-262)||(38254153-38254318)
chr3 (405-494)||(38254458-38254547)
[»] chr6 (8 HSPs)
chr6 (162-262)||(20656262-20656362)
chr6 (405-494)||(20656984-20657073)
chr6 (405-494)||(12036669-12036758)
chr6 (162-262)||(12036193-12036293)
chr6 (405-491)||(12035969-12036055)
chr6 (196-250)||(12036463-12036517)
chr6 (41-255)||(20656623-20656837)
chr6 (434-491)||(20656048-20656105)
[»] chr2 (3 HSPs)
chr2 (162-262)||(22177165-22177265)
chr2 (405-494)||(22177405-22177494)
chr2 (405-494)||(22169130-22169219)


Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 498
Target Start/End: Original strand, 4355365 - 4355850
Alignment:
Q  13 tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4355365 tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttacttctttgccaaaccattaatgatcatggt 4355464  T
Q  113 ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4355465 ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca 4355564  T
Q  213 tcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatga 312  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4355565 tcatgttagatttctcttcagatgattacaaggtgtttctttttgaaaacccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatga 4355664  T
Q  313 aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgtt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4355665 aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattaatgtt 4355764  T
Q  413 atctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4355765 atctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttatcatctcgagaatggaaactc 4355850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 498
Target Start/End: Complemental strand, 4675547 - 4675062
Alignment:
Q  13 tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4675547 tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttacttctttgccaaaccattaatgatcatggt 4675448  T
Q  113 ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4675447 ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca 4675348  T
Q  213 tcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatga 312  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4675347 tcatgttagatttctcttcagatgattacaaggtgtttctttttgaaaacccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatga 4675248  T
Q  313 aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgtt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  4675247 aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacttgtttcacaacaaagccatttatgtt 4675148  T
Q  413 atctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4675147 atctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttatcatctcgagaatggaaactc 4675062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 41 - 494
Target Start/End: Original strand, 38248980 - 38249430
Alignment:
Q  41 ctatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaa 140  Q
    ||||||||||||| | |||||||||||||  |||||||| |  || || | || ||||||||||||||||  ||||||||||||||||| |  ||||||     
T  38248980 ctatcaaattcaatttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccag 38249079  T
Q  141 tcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcatta 240  Q
    |||| |||| | |||||| |||||||||||| ||||||||||||||||| |||  || || || ||||||| || ||||||||||||||| |||| | ||    
T  38249080 tcacaaagtcttggtcttccattcctacccccgagtcacttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgacta 38249179  T
Q  241 caaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggat 340  Q
    |||  ||||||||||||||||| |||  ||||||||| |   || ||| ||||||||| ||||||| |||   |||||||||||||||| |||||||||     
T  38249180 caagttgtttctttttgaaaacacaagtgaatggtcacc---aacttgttatacatgtagtgtttaccatagcaaggaaggtgtgtggacaacaatggaa 38249276  T
Q  341 aatgg-tttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatctcagattgttctcattattttgca 439  Q
    | ||| ||| | || ||||||  |||||||||| || ||||||   |||||||||||   || | ||||| ||||||||||| |   || ||| ||||||    
T  38249277 agtggtttttcatg-tggtggtcgaaacatgaaatttgacatgcctgtgtttcacaaaggaggccttcattttatctcagatagcgatccttactttgca 38249375  T
Q  440 aaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa 494  Q
    ||| |||| || ||||| |||||||| ||||||||||||||| | ||||| ||||    
T  38249376 aaatctagtccattttataagccatatataatgtcttataatatagagaacggaa 38249430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 38254153 - 38254318
Alignment:
Q  97 cattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttca-ttcctaccccagagtcacttcaaagaaatcatga 195  Q
    |||||||||||||| ||| ||||||||| | |||| ||||||| | || ||||   ||||||||| ||||||| || |||||| |||||||||| |||      
T  38254153 cattaatgatcatgatccgattgagtttgtaatatgtaatccagttactaagtcctggtctttcacttcctactcctgagtcatttcaaagaaaccatag 38254252  T
Q  196 ttttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaac 262  Q
    ||||| |  ||||||| |||| |||| |||||||| |||| | ||||| ||||||||||| ||||||    
T  38254253 ttttgttggtataaacctcatattag-ttgctctttagatgactacaaggtgtttcttttggaaaac 38254318  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 38254458 - 38254547
Alignment:
Q  405 ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa 494  Q
    ||||| |||||||||||||  ||  |||  |||||| | |||| |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  38254458 ttcattttatctcagattgcgcttcttacattgcaagatctagtcctttttataagccatatataatgtcttataatctagagaatggaa 38254547  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 20656362 - 20656262
Alignment:
Q  162 ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa 261  Q
    |||||||||| |||||| ||||||||||||||  ||||||| |||||||| ||||||||||||||| || |||| | ||||| ||||||||||| |||||    
T  20656362 ttcctacccctgagtcatttcaaagaaatcatagttttgctgatataaacctcatgttagattgctatttagatgactacaaggtgtttcttttggaaaa 20656263  T
Q  262 c 262  Q
    |    
T  20656262 c 20656262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 20656984 - 20657073
Alignment:
Q  405 ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa 494  Q
    ||||| |||||||||||||  ||  ||| ||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  20656984 ttcattttatctcagattgcacttcttactttgcaaaatctaggcctttttataagccatatataatgtcttataatctagagaatggaa 20657073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 12036669 - 12036758
Alignment:
Q  405 ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa 494  Q
    ||||| ||||||||||||||  |  ||| ||||||||| |||| |||||||| |||||||| | ||||||||||||||| ||||||||||    
T  12036669 ttcattttatctcagattgtgattcttactttgcaaaatctagtcctttttataagccatatacaatgtcttataatctagagaatggaa 12036758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 12036293 - 12036193
Alignment:
Q  162 ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa 261  Q
    |||||||||| |||||| |||||||||| |||  ||||||| |||||||| |||||||||||||||||  |||| | | ||| |||||||| || |||||    
T  12036293 ttcctaccccggagtcatttcaaagaaaccatagttttgctgatataaacctcatgttagattgctctatagatgactgcaaggtgtttctgttggaaaa 12036194  T
Q  262 c 262  Q
    |    
T  12036193 c 12036193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 491
Target Start/End: Complemental strand, 12036055 - 12035969
Alignment:
Q  405 ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatg 491  Q
    ||||| |||||||||||||  |   ||| ||||||||| |||| |||||||| |||| ||| ||||||||||||||||| |||||||    
T  12036055 ttcattttatctcagattgcgcctcttactttgcaaaatctagtcctttttataagctatatataatgtcttataatctagagaatg 12035969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 12036463 - 12036517
Alignment:
Q  196 ttttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgttt 250  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||||||| ||||||    
T  12036463 ttttgcttatataaacctcatgttagattgctctttagatgattacaaggtgttt 12036517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 255
Target Start/End: Original strand, 20656623 - 20656837
Alignment:
Q  41 ctatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaa 140  Q
    ||||||||||||  | |||||||||||||  |||||||| |  || || | || |||||||||||||||| |   |||||||||   | || |||||||     
T  20656623 ctatcaaattcagtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgatttgattgagtttggaaaatgtaatccag 20656722  T
Q  141 tcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcatta 240  Q
    | || |||| | ||||||   |||| ||||   ||||| |||||||||| |||  ||||||| |||||||| |||| ||||||||||||| |||| | ||    
T  20656723 ttacaaagtcttggtcttcacttcccacccgttagtcatttcaaagaaaccatagttttgctgatataaacctcattttagattgctctttagatgacta 20656822  T
Q  241 caaagtgtttctttt 255  Q
    |||  ||||||||||    
T  20656823 caagatgtttctttt 20656837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 20656105 - 20656048
Alignment:
Q  434 tttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatg 491  Q
    ||||||||| |||| |||||||| ||||||||  |||||||||||||||| |||||||    
T  20656105 tttgcaaaatctagtcctttttataagccatatgtaatgtcttataatctagagaatg 20656048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 22177165 - 22177265
Alignment:
Q  162 ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa 261  Q
    ||||||| || |||||| ||||||||||||||  |||||||  ||||||| |||||||||||||||||| |||| | | ||| ||||||||||| |||||    
T  22177165 ttcctactcctgagtcatttcaaagaaatcatagttttgctggtataaacctcatgttagattgctctttagatgacttcaacgtgtttcttttggaaaa 22177264  T
Q  262 c 262  Q
    |    
T  22177265 c 22177265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 22177405 - 22177494
Alignment:
Q  405 ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa 494  Q
    ||||| |||||||||||||  ||  ||| ||||||||| | || |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  22177405 ttcattttatctcagattgcgcttcttactttgcaaaatccagtcctttttataagccatatataatgtcttataatctagagaatggaa 22177494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 22169130 - 22169219
Alignment:
Q  405 ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa 494  Q
    ||||| |||||||||||||  ||  ||| | ||||||| | || |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  22169130 ttcattttatctcagattgcgcttcttactatgcaaaatccagtcctttttataagccatatataatgtcttataatctagagaatggaa 22169219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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