View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8920_low_6 (Length: 469)
Name: NF8920_low_6
Description: NF8920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8920_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 11646842 - 11647311
Alignment:
| Q |
1 |
tgttagtttgtatttttaagtgtgtgattcgacaagaaaattggttatcaagaccatga----aattctctaattgcgggatggagaataaagatttcga |
96 |
Q |
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| T |
11646842 |
tgttagtttgtatttttaagcgtgtgattcgacaagaaaattggttatcaagaccatgaatgaaattctctaattgcgggatggagaataaagatttcga |
11646941 |
T |
|
| Q |
97 |
caggagtggttcgactagttctttaattcgactagaagaattcaaatctttggcaaagaagcaagattaagagtccagacacgtggaagcagactaaagc |
196 |
Q |
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| T |
11646942 |
caggagtggttcgactagttctttaattcgactagaggaattcaaatcattgctaaagaagcaagattaagagtccagacacgtggaagcaggcttaagc |
11647041 |
T |
|
| Q |
197 |
tatcgaaaagatgtagtttagaaccgttggttagttagttatttttc-----------------ttggagtgatgctatacatcacgagaaaattcatca |
279 |
Q |
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| T |
11647042 |
tattgaaaagatgtagtttagaaccgttggtcagttagttatttttcttatgtatatataataattggagtgatgctatatatcacgagaaaattcatca |
11647141 |
T |
|
| Q |
280 |
agaatgcatcgcgaaagccaacaacaaggctaacnnnnnnnnnnnnnntctggcccaccatatatgttgcaattac-aaaaaacattc-----ttagctt |
373 |
Q |
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| T |
11647142 |
agaatgcatcgtgaaagctaacagcaagggtaa-tgaaaaaaaaaaagcctggcccaccatacatgttgcagttacaaaaaaacattcaggaattagctt |
11647240 |
T |
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| Q |
374 |
ttacacatgtcgcgaagatttcatgaagcatgatttcgctataaggagcatttccgatagtagtttttcat |
444 |
Q |
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| T |
11647241 |
ttacacatgtcgcaaagatttcgtgaagcatgatttcgctataaggagcatttccgatagtagtttttcat |
11647311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 50706141 - 50706086
Alignment:
| Q |
247 |
gagtgatgctatacatcacgagaaaattcatcaagaatgcatcgcgaaagccaaca |
302 |
Q |
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| T |
50706141 |
gagtgatgctatacatcacgagaaaattcatccagaatgcatcacgaaagccaaca |
50706086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 50706069 - 50705997
Alignment:
| Q |
343 |
atgttgcaattacaaaaaacattc-----ttagcttttacacatgtcgcgaagatttcatgaagcatgatttc |
410 |
Q |
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| T |
50706069 |
atgttgcagttacaaaaaacattcaggaattagcttttacacatgttgcgtagatttcgtgaaggatgatttc |
50705997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 5062194 - 5062226
Alignment:
| Q |
38 |
aaattggttatcaagaccatgaaattctctaat |
70 |
Q |
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| T |
5062194 |
aaattggttatcaagaccatgaaattctttaat |
5062226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 2657399 - 2657505
Alignment:
| Q |
329 |
ctggcccaccatatatgttgcaattacaaaaaacattct-----tagcttttacacatgtcgcgaagatttcatgaagcatgatttcgctataaggagca |
423 |
Q |
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||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| | | ||| ||||| |
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| T |
2657399 |
ctggcccaccatacatgttacaggtacaaaaaacattcaggaaatagcttttacacatgtcgcggagatttcgtgaagcatgattttgttgtaaagagca |
2657498 |
T |
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| Q |
424 |
tttccga |
430 |
Q |
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| T |
2657499 |
tttccga |
2657505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14628471 - 14628531
Alignment:
| Q |
1 |
tgttagtttgtatttttaagtgtgtgattcgacaagaaaattggttatcaagaccatgaaat |
62 |
Q |
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| T |
14628471 |
tgttagtctgtatttt-aagtgtgtgtttcgacaagaaaattggttattaagatcatgaaat |
14628531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 10704805 - 10704850
Alignment:
| Q |
256 |
tatacatcacgagaaaattcatcaagaatgcatcgcgaaagccaac |
301 |
Q |
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| T |
10704805 |
tatacatcacgagaaaatttctcaagaatgcatcacgaaagtcaac |
10704850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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