View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_19 (Length: 453)
Name: NF8921_high_19
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 203 - 445
Target Start/End: Complemental strand, 49164528 - 49164286
Alignment:
| Q |
203 |
aataaatgaaatgatagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacat |
302 |
Q |
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| T |
49164528 |
aataaatgaaatgatagagattaatccaaccatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacat |
49164429 |
T |
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| Q |
303 |
cttcacttgcgtcaattctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164428 |
cttcacttgcgtcaattctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttc |
49164329 |
T |
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| Q |
403 |
aattggattgctctgttcatgttgattattaccatcaacacga |
445 |
Q |
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| T |
49164328 |
aattggattgctctgttcatgttgattattaccatcaacacga |
49164286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 12874131 - 12874077
Alignment:
| Q |
287 |
gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag |
341 |
Q |
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| T |
12874131 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag |
12874077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 204 - 441
Target Start/End: Complemental strand, 43750993 - 43750756
Alignment:
| Q |
204 |
ataaatgaaatgatagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatc |
303 |
Q |
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| T |
43750993 |
ataaatgaaatgatagagattaatccaatcaagaattttttatacctttaacttggacaagtttaggattttttttcaatttggagcttgttccaacgtc |
43750894 |
T |
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| Q |
304 |
ttcacttgcgtcaattctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttca |
403 |
Q |
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|| |||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||| | | ||||| ||||||||| ||||| |
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| T |
43750893 |
tttgcttgcgccaattctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttca |
43750794 |
T |
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| Q |
404 |
attggattgctctgttcatgttgattattaccatcaac |
441 |
Q |
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| T |
43750793 |
acgaggttgttctgctcatgttgattatttccatcaac |
43750756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 34849463 - 34849666
Alignment:
| Q |
4 |
gagatggacatcacatatcgacttaaaatatctaatgaacatatttttccaactcaacataacgcttctacatttttcaattcttaggtcccacgaaaga |
103 |
Q |
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||||| |||| ||||||||||||||||||||||||||| | ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
34849463 |
gagattgacaccacatatcgacttaaaatatctaatgagcgtattttttcaactcagcataacacttctacatttttcaattcttagatcccaccaaaga |
34849562 |
T |
|
| Q |
104 |
ctaaaagtagaatcatttgaaataatagatcttgaatnnnnnnnncagcatcaaagcaaataacatccctaaactataaatgttaagatgaaaaaattta |
203 |
Q |
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| T |
34849563 |
ctaaaag--aaatcatttgaaataatagatcttgaataaaaaaaa-agcatgaaagcaaat-acatctctaaactataaattttaagatgaaaaaattta |
34849658 |
T |
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| Q |
204 |
ataaatga |
211 |
Q |
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|||||||| |
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| T |
34849659 |
ataaatga |
34849666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 10973885 - 10973943
Alignment:
| Q |
48 |
ttttccaactcaacataacgcttctacatttttcaattcttaggtcccacgaaagactaaaa |
109 |
Q |
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|||| ||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||| |
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| T |
10973885 |
tttttcaactcaacataacgct---acatttttcatttcttagatcccaccaaagactaaaa |
10973943 |
T |
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