View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_23 (Length: 400)
Name: NF8921_high_23
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 11044122 - 11043757
Alignment:
| Q |
15 |
atcaaaatggtgaattctatttgcagttgttctagtaatcacatcacttatgatacaaataaaacaaaattgaattatacatacttaagttcttgtctaa |
114 |
Q |
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| T |
11044122 |
atcagaatggtgaattctatttgcagttgttctagtaatcacatcacctataatacaaataaaacaaa-ttgaattatacagacttaagttcttgtataa |
11044024 |
T |
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| Q |
115 |
gcagacttattgttaatcaataagtgcatactggcagtcaatttaatgaaaccgcctttggccattgtgattttgataaaaattacatttttataatttt |
214 |
Q |
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| T |
11044023 |
gcagacttattgt-aatcaataagtgcatattggcagtcagtttaatgaaaccgcctttggccattgagattttgataaaaattacatttttataatttc |
11043925 |
T |
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| Q |
215 |
aacaaaataacagtgtagttggattttaccaaacccacctatccatcaaaatctatgaagcattggcgcagacaccaaacaagacatgaaaaattgacga |
314 |
Q |
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|||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||| || | |||||||||||||||| ||||||||| || |
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| T |
11043924 |
aacaaaataatagtgtagttggattttaccaaacaca-ctatccatcaaaacctatgaagcattagcactgacaccaaacaagacactaaaaattgatga |
11043826 |
T |
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| Q |
315 |
gtggacaattgtaataatttaaatgtaatcatacatacactaaaaccaaggaaaatcacatatatcaat |
383 |
Q |
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| T |
11043825 |
gtggacaattgtaataatataaatgtaaacatacatacacttaaaccaagcaaaatcacatatatcaat |
11043757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 5933438 - 5933315
Alignment:
| Q |
20 |
aatggtgaattctatttgcagttgttctagtaatcacatcacttatgatacaaataaaacaaaattgaattatacatacttaagttcttgtctaagcaga |
119 |
Q |
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|||||||||||| | ||| |||||||| || || |||||||| || |||| || |||||||||| |||||||||| ||||||||||||||| | ||| |
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| T |
5933438 |
aatggtgaattccacttgaagttgttccagaaaccacatcacctacaatacgaacaaaacaaaatagaattatacaaccttaagttcttgtctgaataga |
5933339 |
T |
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| Q |
120 |
cttattgttaatcaataagtgcat |
143 |
Q |
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| T |
5933338 |
cttatggctaatcaactagtgcat |
5933315 |
T |
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