View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_28 (Length: 346)
Name: NF8921_high_28
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 54288532 - 54288857
Alignment:
| Q |
5 |
agtttcgtgttcaggtttatcatctcccataaccgtggaacatcataaaacaagaccacaaaatttactgtaagaaaagaataacgtttacttctcaatt |
104 |
Q |
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| T |
54288532 |
agtttcttgttcaggtttatcatctcccataaccgtggaacatcataaaacaagaccacaaaatttactgtaagaaaagaataacgtttacttctcaatt |
54288631 |
T |
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| Q |
105 |
tccattatttcttgtgcctcatcatgcttaaacattgaacttgaacattatgctttgtatacttttactattattaacagaataaagaataatatgctta |
204 |
Q |
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| T |
54288632 |
tccattatttcttgtgcctcatcatgcttaaacattgaacttgaacattatgctttgtatatttttactattattaatagaataaagaataatatgctta |
54288731 |
T |
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| Q |
205 |
ataatactatgaacatcggtgtttttatcagctcatcctcggaagaaggacttgcgattaatagaagacaactaattctttacacatccactgcagcaat |
304 |
Q |
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| T |
54288732 |
ataatactatgaatatccgtgtttttatcagctcatcctcggaagaaggacttgcgattaatagaagacaactaattctttacacatccactgcagcaat |
54288831 |
T |
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| Q |
305 |
tgcagcttcatctactgactcaaatg |
330 |
Q |
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| T |
54288832 |
tgcagcttcatctactgactcaaatg |
54288857 |
T |
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