View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_3 (Length: 821)
Name: NF8921_high_3
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 22 - 807
Target Start/End: Complemental strand, 45321623 - 45320838
Alignment:
| Q |
22 |
agaagtgggcctagtaaaggcaggaaatcagtaagaaagcgcaagtcatagtcaaaagcagttacggcaatttatacaattgggtcttcagttattgtct |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
45321623 |
agaagtgggcctagtaaaggcaggaaatcagtaagaaagcgcaagtcattgtcaaaaccagttacagcaatttatacaattgggtctttagttattgtct |
45321524 |
T |
|
| Q |
122 |
gcccatgtgctgatataagcactgtaacttcattattgcacactatcatcacttccgggagatctgtcccgaaagtaagtaagctacccagccctgcaat |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
45321523 |
gcccatgtgctgatataagcactgtaacttcattattgcacactatcatcacttccgggagatctgtcccgaaagtaagtaagctaccctgccccacaat |
45321424 |
T |
|
| Q |
222 |
ctctctacaacaagaagccccttcattttatattcaagggtggctgaccatgggaaaactttgccttgctgatgggaagcttgcaaagaactatattcct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45321423 |
ctctctacaacaagaagccccttcattttatattcaagggtggctgaccatgggaaaactttgccttgctgatgggaagcttgcaaagaactatattcct |
45321324 |
T |
|
| Q |
322 |
ttgtttgttcaggagcttgaaaaggccgactctgcagctcttcgcaataatattgtggttgcaatggcagacttttgcgttcggtacactgctcttattg |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
45321323 |
ttgtttgttcaggagcttgaaaaggccgactctgcagctcttcgcaataatattgtggttgcaacggcagacttttgtgttcggtacactgctcttattg |
45321224 |
T |
|
| Q |
422 |
attggcaagctttgtaagagatactgcattgaagtcattttcaattaaacaagtataataatgtaaatgaaataatctaacaaattgattaacaagtatt |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45321223 |
attggcaagctttgtaagagatactgcattgaagtcattttcaattaaacaagtataataatgtaaatgaaataatctaacaaattgattaacaagtatt |
45321124 |
T |
|
| Q |
522 |
atatatactgaggagaattattacttcatgctggggaagaagtctaatgttcacgttatgcggaatttatatattcaattatgtcaagtaaatactctct |
621 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45321123 |
atatatactgaggagaattattacttcatgctggggaagaagtctaatgttcacgttatgcggaatttatatattcaattatgtcaagtaaatactctct |
45321024 |
T |
|
| Q |
622 |
ttgctaacttattttttcattgaagctaccagttacataaacaagatcacaaggtgtctcttagatccttgtgagcttgtgagaaggaaaacgtttgtat |
721 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
45321023 |
ttgctaacttattttttcattgaagctaccagttacataaccaagatcacaaggtgtctcttagatccttgtgagcttgtgagaaggcaaacgttcgtat |
45320924 |
T |
|
| Q |
722 |
tgctatcgagactcttgcaggtattgnnnnnnnnnnnnccttctatgactacactgtttctattttatacctttaactgatgtcca |
807 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45320923 |
tgctatcgagactcttgcaggtattgttttttctttttccttctatgactacactgtttctattttatacctttaactgatgtcca |
45320838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 331 - 795
Target Start/End: Complemental strand, 14236297 - 14235830
Alignment:
| Q |
331 |
caggagcttgaaaaggccgactctgcagctcttcgcaataatattgtggttgcaatggcagacttttgcgttcggtacactgctcttattgattggcaag |
430 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
14236297 |
caggagcttgaaaaggccgactctgcagctcttcgcaataatattgtggtcacgatggcagacttttgtgttcggtacactgctcttattgattggtaag |
14236198 |
T |
|
| Q |
431 |
ctttgtaagagatactgcattgaagtcattttcaattaaacaagtataataatgtaaatgaaataatctaacaaattgattaacaagt-----attatat |
525 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
14236197 |
ctttgtaagagatactgcattgaagttatttttaattaaacaagtataataatgtaaatgaaataatctaacaaattgattaacaagtaatggatgatat |
14236098 |
T |
|
| Q |
526 |
atactgaggagaattattacttcatgctggggaagaagtctaatgttcacgttatgcggaatttatatattcaattatgtcaagtaaatactctctttgc |
625 |
Q |
| |
|
| |||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||||||||| | ||||| |||||||||||||| ||||||||| |
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| T |
14236097 |
aaactgaggagaattattactttatgctgaggaagaagtccaatgttcacattatgcggaatttatacagtcaataatgtcaagtaaatattctctttgc |
14235998 |
T |
|
| Q |
626 |
taacttattttttcattgaagctaccagttacataaacaagatcacaaggtgtctcttagatccttgtgagcttgtgagaaggaaaacgtttgtattgct |
725 |
Q |
| |
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||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||| |
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| T |
14235997 |
taactta--atttctttgaagctaccagttacataaccaagatcacaaggtgtctcttagatccttgtgaacttgtgagaaggcaaacattcatattgct |
14235900 |
T |
|
| Q |
726 |
atcgagactcttgcaggtattgnnnnnnnnnnnnccttctatgactacactgtttctattttataccttt |
795 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14235899 |
atcgagactgttgcaggtattgttttgtctttttccttctatgactacactgattctatttcataccttt |
14235830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 14236703 - 14236391
Alignment:
| Q |
22 |
agaagtgggcctagtaaaggcaggaaatcagtaagaaagcgcaagtcatagtcaaaagcagttacggcaatttatacaattgggtcttcagttattgtct |
121 |
Q |
| |
|
||||||||||| |||||||| |||| |||| ||||||||||||||||| |||||||||| |||| || ||||||||||||||||||| | ||||||| | |
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|
| T |
14236703 |
agaagtgggccaagtaaaggtcggaagtcaggaagaaagcgcaagtcattgtcaaaagcaattactgctatttatacaattgggtctttaattattgttt |
14236604 |
T |
|
| Q |
122 |
gcccatgtgctgatataagcactgtaacttcattattgcacactatcatcacttccgggagatctgtcccgaaagtaagtaagctacccagccctgcaat |
221 |
Q |
| |
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|||| | ||||||||| || || ||| | |||||||||||||||||||||| || |||| |||| ||| ||| ||| |||||||| | ||||||||| |
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| T |
14236603 |
gcccgtctgctgatatgagtgctataattccattattgcacactatcatcacctctgggaattctgacccaaaattaaataagctactcggccctgcaac |
14236504 |
T |
|
| Q |
222 |
ctctctacaacaagaagccccttcattttatattcaagggtggctgaccatgggaaaactttgccttgctgatgggaagcttgcaaagaactatattcct |
321 |
Q |
| |
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|||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| |
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|
| T |
14236503 |
ctctctacaacaagaatctccttctttttatattcaagggtggctgaccatgggcaaactttgtcttgctgatggaaagcttgcaaagaactacattcct |
14236404 |
T |
|
| Q |
322 |
ttgtttgttcagg |
334 |
Q |
| |
|
||||||| |||| |
|
|
| T |
14236403 |
ctgtttgtacagg |
14236391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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