View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_30 (Length: 340)
Name: NF8921_high_30
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 96 - 322
Target Start/End: Complemental strand, 4388563 - 4388337
Alignment:
| Q |
96 |
tctgattaaatttgaaagattttctagattaaatacctagactttgactgttatcgatgtttatgtcttggtacttgttaaaagcttaatactatagctt |
195 |
Q |
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| T |
4388563 |
tctgattaaatttgaaagattttctagattaaatacctagaatttgactgttatcgatgtttatatcttggtacttgttaaaagcttaatactatagctt |
4388464 |
T |
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| Q |
196 |
aaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagtttaatgagatgcctgtagtgattttcttatctatgttctt |
295 |
Q |
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| T |
4388463 |
aaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagtttaatgagatgcctgtagtgattttcttatctatgttctt |
4388364 |
T |
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| Q |
296 |
ttactatatggttattatgaactttgt |
322 |
Q |
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| T |
4388363 |
ttactatatggttattatgaactttgt |
4388337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 4375890 - 4375746
Alignment:
| Q |
96 |
tctgattaaatttgaaagattttctagattaaatacctagactttgactgttatcgatgtttatgtcttggtacttgttaaaagcttaatac--tatagc |
193 |
Q |
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| T |
4375890 |
tctgattaaatttgaaagattttctagattaaatacctagaatttgactattattgatgtttatgtcttggtactttttaaaagcttaatactatatagc |
4375791 |
T |
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| Q |
194 |
ttaaggtatgaatttgtgacttatgaattgtgtttggctttctta |
238 |
Q |
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| T |
4375790 |
ttaaggttttaatttgtgacttatgaattgtgtttggctttctta |
4375746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 4383476 - 4383341
Alignment:
| Q |
122 |
gattaaatacctagactttgactgttatcgatgtttatgtcttggtacttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaat |
221 |
Q |
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| T |
4383476 |
gattaaatacctagaatttgactattatcgatgtttat--cttggtacttgttaaatccttaatactt--gcttaaggttttaatttgtgacttgtgaat |
4383381 |
T |
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| Q |
222 |
tgtgtttggctttcttatgggttttgagttaagtttaatg |
261 |
Q |
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| T |
4383380 |
tgtgtttggctttcttatgggttttcacttgagtttaatg |
4383341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 4368629 - 4368505
Alignment:
| Q |
168 |
acttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagtttaatgagatgc |
267 |
Q |
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| T |
4368629 |
acttgtgaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaattaagtttagtgtattgt |
4368530 |
T |
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| Q |
268 |
ctgtagtgattttcttatctatgtt |
292 |
Q |
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||| |||||||||||||| |||||| |
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| T |
4368529 |
ctgaagtgattttcttatatatgtt |
4368505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 4364239 - 4364116
Alignment:
| Q |
168 |
acttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagtttaatgagatgc |
267 |
Q |
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| T |
4364239 |
acttgttaaaagcttaatactcaagcttaagtttgtaatttgtgacttatgaattgtgtatgaattacctatggg-tttgaattaagtgtagtgtactgt |
4364141 |
T |
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| Q |
268 |
ctgtagtgattttcttatctatgtt |
292 |
Q |
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| T |
4364140 |
ctgtagtaattttcttatttatgtt |
4364116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 5726978 - 5727018
Alignment:
| Q |
104 |
aatttgaaagattttctagattaaatacctagactttgact |
144 |
Q |
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| T |
5726978 |
aatttgaaatattttctagattaaatacatagaatttgact |
5727018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 3596281 - 3596363
Alignment:
| Q |
96 |
tctgattaaatttgaaagattttctagattaaatacctagactttgactgttatcgatgtttatgtcttggtacttgttaaaa |
178 |
Q |
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| T |
3596281 |
tctgattaaattttaaagattttctagattaaatacttagaatttgactattatcgatgtttatgtcttggtacttgttaaaa |
3596363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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