View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_34 (Length: 314)
Name: NF8921_high_34
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 3224332 - 3224052
Alignment:
| Q |
18 |
agcacttgattaagttgtttattataaatctcttttaatgcttgagttgttgctaagtattatgttattgcatttaaaagaatatttgtatgtaaaataa |
117 |
Q |
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| T |
3224332 |
agcacttgattaagttgtttattataaatctcttttaatgcttgagtggttgctaagtattatgttattgcatttaaaagaatatttgtgtgtaaaataa |
3224233 |
T |
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| Q |
118 |
cgtgattatattacaggctggaagatacaaaaaccctgaagagaatcccttctttccagaaaatttatcattgtcacttgttccatcttaccccttcaca |
217 |
Q |
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| T |
3224232 |
cgtgattatattacaggctggaagatacaaaaaccctgaagagaatcccttctttccagaaaatttatcattgtcacttgttccatcttaccccttcaca |
3224133 |
T |
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| Q |
218 |
aaggtaattcattaaaactgatatgatttttcaatttccacagttaatacaacttagaataaaaatgacttattttaaaat |
298 |
Q |
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| T |
3224132 |
aaggtaattcatcaaaactgatatgatttttcaatttccacagttaatacaacttagaataaaaatgacttattttaaaat |
3224052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 3215626 - 3215457
Alignment:
| Q |
18 |
agcacttgattaagttgtttattataaatctcttttaatgcttgagttgttgctaagtattatgttattgcatttaaaagaatatttgtatgtaaaataa |
117 |
Q |
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| T |
3215626 |
agcacttcattaatttgtttattataaatctcttttaactcttgagtggttgccaagcattatgttattgcatttgaaagaatatttgt--gtaaaataa |
3215529 |
T |
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| Q |
118 |
cgtgattatattacaggctggaagatacaaaaaccctgaagagaatcccttctttccagaaaatttatcatt |
189 |
Q |
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| T |
3215528 |
tgtgattatattacaggctggaagattcaaaaaccctgaagagaatcccttctttccagaaaatttaccatt |
3215457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 26615327 - 26615262
Alignment:
| Q |
123 |
ttatattacaggctggaagatacaaaaaccctgaagagaatcccttctttccagaaaatttatcat |
188 |
Q |
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|||| ||||||||||||||| | ||| |||||||||||||||||| ||| ||||||||||||||| |
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| T |
26615327 |
ttattttacaggctggaagacgccaaatccctgaagagaatcccttgtttgcagaaaatttatcat |
26615262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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