View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_high_37 (Length: 279)
Name: NF8921_high_37
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 41559616 - 41559372
Alignment:
| Q |
12 |
aagcagagactaggaagaatcatatttcatcattgacatcattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaattccaaaaaaccaa |
111 |
Q |
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| T |
41559616 |
aagcacagactaggaagaatcatatttcatcattgacattattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaattccaaaaaaccaa |
41559517 |
T |
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| Q |
112 |
tatgtactatcctttgatgttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcat |
211 |
Q |
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| T |
41559516 |
tatgtactatcctttgatgttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcat |
41559417 |
T |
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| Q |
212 |
aaaatagtgcattttccatgattgagtgtgatctcatcacgtacc |
256 |
Q |
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| T |
41559416 |
aaaatagtgcattttccatgattgagtgtgatctcatcacgtacc |
41559372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 41543416 - 41543327
Alignment:
| Q |
130 |
gttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcataaaatagt |
219 |
Q |
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| T |
41543416 |
gttcagaactcttagatgcatcagggccagggatttgcagcatcactggcgataatttgttttatacaaatgtacacatcataaaatagt |
41543327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 41543486 - 41543417
Alignment:
| Q |
28 |
gaatcatatttcatcattgacatcattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaa |
97 |
Q |
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| T |
41543486 |
gaatcatattttatcactgacatcattatgatatcaatgaagtttgtgaaaacaacagaaggtctcagaa |
41543417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 41543268 - 41543229
Alignment:
| Q |
217 |
agtgcattttccatgattgagtgtgatctcatcacgtacc |
256 |
Q |
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| T |
41543268 |
agtgcatattccatgattgagtgtgatctcatcaagtacc |
41543229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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