View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_high_46 (Length: 234)

Name: NF8921_high_46
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_high_46
NF8921_high_46
[»] scaffold0016 (2 HSPs)
scaffold0016 (79-221)||(40574-40716)
scaffold0016 (14-81)||(14097-14164)
[»] chr7 (17 HSPs)
chr7 (81-217)||(32094407-32094543)
chr7 (14-79)||(34132822-34132887)
chr7 (14-81)||(22346865-22346932)
chr7 (14-84)||(28415145-28415215)
chr7 (14-80)||(34139134-34139200)
chr7 (14-79)||(13270887-13270952)
chr7 (14-77)||(43906101-43906164)
chr7 (14-80)||(1858567-1858633)
chr7 (14-79)||(18779065-18779130)
chr7 (15-79)||(6852014-6852078)
chr7 (40-79)||(42631285-42631324)
chr7 (41-79)||(15683152-15683190)
chr7 (21-79)||(23878702-23878760)
chr7 (40-81)||(9460443-9460484)
chr7 (35-79)||(794081-794125)
chr7 (47-79)||(7528871-7528903)
chr7 (21-81)||(8810063-8810123)
[»] scaffold0167 (1 HSPs)
scaffold0167 (14-81)||(7978-8045)
[»] scaffold0027 (2 HSPs)
scaffold0027 (14-81)||(23581-23648)
scaffold0027 (21-80)||(397-456)
[»] chr5 (22 HSPs)
chr5 (14-81)||(36448247-36448314)
chr5 (14-79)||(20092753-20092818)
chr5 (14-79)||(25532868-25532933)
chr5 (14-81)||(23378301-23378368)
chr5 (14-79)||(20099650-20099715)
chr5 (14-79)||(20639863-20639928)
chr5 (14-81)||(15956982-15957049)
chr5 (14-77)||(26186649-26186712)
chr5 (14-79)||(25526188-25526253)
chr5 (14-79)||(36454627-36454692)
chr5 (14-79)||(40014876-40014941)
chr5 (14-79)||(37048344-37048409)
chr5 (14-68)||(25042281-25042335)
chr5 (40-79)||(21688153-21688192)
chr5 (40-79)||(21696072-21696111)
chr5 (40-79)||(26553292-26553331)
chr5 (21-79)||(11939621-11939679)
chr5 (40-81)||(17947982-17948023)
chr5 (48-81)||(21808311-21808344)
chr5 (42-79)||(29901229-29901266)
chr5 (21-81)||(11953545-11953605)
chr5 (35-79)||(25677884-25677928)
[»] chr4 (21 HSPs)
chr4 (14-81)||(20548379-20548446)
chr4 (14-79)||(19738009-19738074)
chr4 (14-79)||(20555005-20555070)
chr4 (14-81)||(50187781-50187848)
chr4 (14-79)||(3382445-3382510)
chr4 (23-80)||(39745430-39745487)
chr4 (17-79)||(3389196-3389258)
chr4 (21-79)||(22175845-22175903)
chr4 (22-76)||(3439629-3439683)
chr4 (14-80)||(25984368-25984434)
chr4 (14-83)||(4619216-4619285)
chr4 (40-85)||(13100664-13100709)
chr4 (14-79)||(14924997-14925062)
chr4 (22-79)||(15580490-15580547)
chr4 (22-79)||(39534175-39534232)
chr4 (36-80)||(55793251-55793295)
chr4 (35-82)||(10220457-10220504)
chr4 (41-79)||(15880072-15880110)
chr4 (14-81)||(47522581-47522650)
chr4 (40-80)||(12427135-12427175)
chr4 (40-80)||(41148978-41149018)
[»] scaffold0290 (1 HSPs)
scaffold0290 (14-80)||(22045-22111)
[»] chr6 (23 HSPs)
chr6 (14-80)||(12667538-12667604)
chr6 (14-79)||(18960997-18961062)
chr6 (14-79)||(28702888-28702953)
chr6 (14-89)||(20459459-20459534)
chr6 (14-80)||(19713679-19713745)
chr6 (14-79)||(20452658-20452723)
chr6 (14-80)||(14176923-14176988)
chr6 (14-79)||(19719836-19719901)
chr6 (14-79)||(22779140-22779205)
chr6 (14-80)||(17784071-17784137)
chr6 (23-79)||(26896467-26896523)
chr6 (14-71)||(10985075-10985132)
chr6 (14-79)||(19898950-19899015)
chr6 (22-89)||(22631684-22631751)
chr6 (14-79)||(15666265-15666330)
chr6 (40-80)||(24150082-24150122)
chr6 (40-79)||(19169106-19169145)
chr6 (40-79)||(24143592-24143631)
chr6 (21-79)||(615926-615984)
chr6 (21-79)||(623827-623885)
chr6 (43-81)||(20058867-20058905)
chr6 (22-80)||(21961606-21961664)
chr6 (40-81)||(8275502-8275543)
[»] chr3 (34 HSPs)
chr3 (14-80)||(16031259-16031325)
chr3 (14-79)||(13111787-13111852)
chr3 (14-79)||(14893146-14893211)
chr3 (14-79)||(21638561-21638626)
chr3 (15-79)||(4313596-4313660)
chr3 (17-79)||(261364-261426)
chr3 (14-80)||(14888041-14888107)
chr3 (14-79)||(13105639-13105704)
chr3 (14-79)||(14881315-14881380)
chr3 (14-79)||(23288122-23288187)
chr3 (14-79)||(30102452-30102517)
chr3 (14-79)||(11180760-11180825)
chr3 (18-79)||(48060734-48060795)
chr3 (17-79)||(68145-68207)
chr3 (17-79)||(74238-74300)
chr3 (14-78)||(12550412-12550476)
chr3 (14-79)||(3404752-3404817)
chr3 (14-79)||(8612622-8612687)
chr3 (14-81)||(8606160-8606227)
chr3 (20-79)||(49967354-49967413)
chr3 (21-77)||(37470141-37470197)
chr3 (22-79)||(13086554-13086611)
chr3 (14-79)||(13509414-13509479)
chr3 (36-79)||(18706267-18706310)
chr3 (21-79)||(20603997-20604055)
chr3 (40-82)||(21607449-21607491)
chr3 (17-79)||(30068681-30068743)
chr3 (21-79)||(37256102-37256160)
chr3 (21-79)||(37265938-37265996)
chr3 (40-81)||(15537758-15537799)
chr3 (14-79)||(15610489-15610554)
chr3 (40-80)||(11630009-11630049)
chr3 (44-80)||(33814598-33814634)
chr3 (40-80)||(46371171-46371211)
[»] chr2 (15 HSPs)
chr2 (14-80)||(20279332-20279398)
chr2 (14-81)||(38084468-38084535)
chr2 (14-80)||(11873681-11873747)
chr2 (14-79)||(18289-18354)
chr2 (14-79)||(18500226-18500291)
chr2 (14-80)||(36735332-36735398)
chr2 (14-81)||(5874252-5874319)
chr2 (14-79)||(5871111-5871176)
chr2 (14-57)||(29586096-29586139)
chr2 (22-81)||(12370462-12370521)
chr2 (36-79)||(22518985-22519028)
chr2 (35-80)||(25036877-25036922)
chr2 (35-80)||(25040984-25041029)
chr2 (40-81)||(39649664-39649705)
chr2 (41-81)||(13038973-13039013)
[»] scaffold0001 (1 HSPs)
scaffold0001 (14-79)||(96782-96847)
[»] chr8 (19 HSPs)
chr8 (14-79)||(14891862-14891927)
chr8 (14-80)||(22162987-22163053)
chr8 (14-80)||(15061336-15061402)
chr8 (14-80)||(25859275-25859341)
chr8 (14-79)||(20733160-20733225)
chr8 (14-79)||(22156978-22157043)
chr8 (14-80)||(32025654-32025720)
chr8 (14-79)||(20725198-20725263)
chr8 (14-79)||(20738096-20738161)
chr8 (15-79)||(25853031-25853095)
chr8 (14-80)||(31999762-31999828)
chr8 (29-80)||(24487931-24487982)
chr8 (17-79)||(32006734-32006795)
chr8 (22-71)||(6030856-6030905)
chr8 (21-79)||(12307679-12307737)
chr8 (43-81)||(45469472-45469510)
chr8 (40-81)||(18433028-18433069)
chr8 (40-80)||(15707137-15707177)
chr8 (40-80)||(23267953-23267993)
[»] chr1 (17 HSPs)
chr1 (14-79)||(19367475-19367540)
chr1 (14-79)||(35070035-35070100)
chr1 (14-81)||(20429351-20429418)
chr1 (14-81)||(44832556-44832623)
chr1 (14-79)||(1961638-1961703)
chr1 (14-79)||(18098375-18098440)
chr1 (14-79)||(22116351-22116416)
chr1 (14-80)||(47108372-47108438)
chr1 (14-68)||(1955829-1955883)
chr1 (29-79)||(2336072-2336122)
chr1 (36-81)||(16884516-16884561)
chr1 (22-81)||(39454379-39454438)
chr1 (41-80)||(22840176-22840215)
chr1 (14-79)||(13450035-13450100)
chr1 (40-81)||(20979997-20980038)
chr1 (29-81)||(20518279-20518331)
chr1 (40-80)||(25926805-25926845)
[»] scaffold1922 (1 HSPs)
scaffold1922 (14-80)||(216-282)
[»] scaffold0150 (1 HSPs)
scaffold0150 (14-80)||(38599-38665)
[»] scaffold0085 (1 HSPs)
scaffold0085 (14-80)||(7799-7865)
[»] scaffold0473 (1 HSPs)
scaffold0473 (14-79)||(9163-9228)
[»] scaffold0320 (1 HSPs)
scaffold0320 (14-79)||(6321-6386)
[»] scaffold0050 (1 HSPs)
scaffold0050 (14-79)||(27716-27781)
[»] scaffold0028 (1 HSPs)
scaffold0028 (14-79)||(65838-65903)
[»] scaffold0351 (1 HSPs)
scaffold0351 (14-81)||(7641-7708)
[»] scaffold0046 (1 HSPs)
scaffold0046 (14-80)||(86697-86763)
[»] scaffold0253 (2 HSPs)
scaffold0253 (14-79)||(10339-10404)
scaffold0253 (14-79)||(19764-19829)
[»] scaffold0630 (1 HSPs)
scaffold0630 (14-70)||(1378-1434)
[»] scaffold0039 (1 HSPs)
scaffold0039 (14-77)||(89874-89937)
[»] scaffold0328 (1 HSPs)
scaffold0328 (14-80)||(177-243)
[»] scaffold0306 (1 HSPs)
scaffold0306 (17-79)||(15644-15706)
[»] scaffold0029 (2 HSPs)
scaffold0029 (29-79)||(38088-38138)
scaffold0029 (40-81)||(20210-20251)
[»] scaffold0441 (1 HSPs)
scaffold0441 (22-81)||(2469-2528)
[»] scaffold0505 (1 HSPs)
scaffold0505 (22-79)||(11470-11527)
[»] scaffold0458 (1 HSPs)
scaffold0458 (22-81)||(9280-9339)
[»] scaffold0094 (2 HSPs)
scaffold0094 (14-79)||(30700-30765)
scaffold0094 (14-79)||(41665-41730)
[»] scaffold1888 (1 HSPs)
scaffold1888 (22-81)||(1058-1117)
[»] scaffold0755 (1 HSPs)
scaffold0755 (40-79)||(963-1002)
[»] scaffold0378 (3 HSPs)
scaffold0378 (41-80)||(3335-3374)
scaffold0378 (41-80)||(15815-15854)
scaffold0378 (41-79)||(770-808)
[»] scaffold0101 (1 HSPs)
scaffold0101 (41-80)||(16565-16604)
[»] scaffold0068 (2 HSPs)
scaffold0068 (40-79)||(17799-17838)
scaffold0068 (40-79)||(25718-25757)
[»] scaffold0023 (1 HSPs)
scaffold0023 (24-79)||(150634-150689)
[»] scaffold0014 (1 HSPs)
scaffold0014 (14-79)||(3766-3831)
[»] scaffold0582 (1 HSPs)
scaffold0582 (35-79)||(391-435)
[»] scaffold0435 (1 HSPs)
scaffold0435 (35-79)||(8394-8438)
[»] scaffold0431 (1 HSPs)
scaffold0431 (40-80)||(2800-2840)
[»] scaffold0182 (1 HSPs)
scaffold0182 (40-80)||(1714-1754)


Alignment Details
Target: scaffold0016 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 40716 - 40574
Alignment:
Q  79 aattggtatttgcgattttttgctacaaattctggttttgatatatgggaatgtacgtggaaaaattgtgactgttaagtttttgatgaagttttctaag 178  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40716 aattggtattagcgattttttgctacaaattctggttttgatatatgggaatgtacgtggaaaagttgtgactgttaagtttttgatgaagttttctaag 40617  T
Q  179 aatttagcctatgcttaggctgtttcagatcatggtgatgtcc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40616 aatttagcctatgcttaggctgtttcagatcatggtgatgtcc 40574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 14164 - 14097
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  14164 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgaggtatgacaat 14097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 32094543 - 32094407
Alignment:
Q  81 ttggtatttgcgattttttgctacaaattctggttttgatatatgggaatgtacgtggaaaaattgtgactgttaagtttttgatgaagttttctaagaa 180  Q
    |||||||| ||| |||| | | |||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||| |||||||||||||||||||||    
T  32094543 ttggtattagcgtttttgtcccacaaattctggttttgatatatgggaatctacatagaaaagttgtgcctgttaagtgtttgatgaagttttctaagaa 32094444  T
Q  181 tttagcctatgcttaggctgtttcagatcatggtgat 217  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  32094443 tttagcctatgcttgggctgtttctgatcatggtgat 32094407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 34132822 - 34132887
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34132822 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 34132887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 22346932 - 22346865
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  22346932 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggacaaaaattggggtatgacaat 22346865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 28415215 - 28415145
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaattgg 84  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  28415215 cagagatcgatcagagtcgagtgacatgtgtcagcggggccttaggtaaaaaattggggtatgacaattgg 28415145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 34139134 - 34139200
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  34139134 cagagatcgatcagagtcaagtgacatgtgtcagtggagccttagatcaaaaattggggtatgacaa 34139200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 13270887 - 13270952
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  13270887 cagagatcgatcagactcgagtgacatgtgtcagtggggccttaggtcaaaaattggaatatgaca 13270952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 43906164 - 43906101
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatga 77  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43906164 cagagatcgatcaggatcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatga 43906101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 1858567 - 1858633
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1858567 cagagattgatcatagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 1858633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 18779065 - 18779130
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  18779065 cagagatcgattagagtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 18779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 6852014 - 6852078
Alignment:
Q  15 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||| || | |||||||||||||| |||||||| |||||||||| |||||||    
T  6852014 agagatcgatcagagtcgagcggcatgtgtcagtgggaccttaggttaaaaattggggtatgaca 6852078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 42631285 - 42631324
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  42631285 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 42631324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 15683190 - 15683152
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  15683190 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 15683152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 23878702 - 23878760
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  23878702 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 23878760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 9460484 - 9460443
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||||||| |||||||||||||| ||||| |||||||||    
T  9460484 tgtgtcagtggagccttaggtcaaaatttggggtatgacaat 9460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 794081 - 794125
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||| |||||||||  | ||||||||||||||||||||||||||    
T  794081 tgacacgtgtcagtgctgtcttaggtcaaaaattgggatatgaca 794125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 7528871 - 7528903
Alignment:
Q  47 gtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||| |||||||||||||||||||||||||||    
T  7528871 gtgggaccttaggtcaaaaattgggatatgaca 7528903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 8810123 - 8810063
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||| |||||||||||  ||||||||||  ||| |||||||| ||||| |||||||||    
T  8810123 cgatcagggtcaagtgacacatgtcagtgggatcttgggtcaaaatttggggtatgacaat 8810063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 8045 - 7978
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8045 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaat 7978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 23648 - 23581
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23648 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaat 23581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 397 - 456
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| ||||||||    
T  397 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgacaa 456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 36448314 - 36448247
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36448314 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaat 36448247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 20092753 - 20092818
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20092753 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20092818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 25532933 - 25532868
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25532933 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 25532868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 23378301 - 23378368
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  23378301 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgaggtatgacaat 23378368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 20099650 - 20099715
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  20099650 cagagatcgatcagagtcaagtgacatgtgttagtggggccttaggtcaaaaattggggtatgaca 20099715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 20639863 - 20639928
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  20639863 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20639928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 15956982 - 15957049
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  15956982 cagagatcgatcagagtcaagtgacatgtgtcagtggaaccttaggtcaaaaattggggtatgacaat 15957049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 26186649 - 26186712
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatga 77  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  26186649 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatga 26186712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 25526253 - 25526188
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  25526253 cagagatcgatcagattcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 25526188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 36454692 - 36454627
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  36454692 cagagatcgatcagagtcaagtgacatgtgtccgtgaggccttaggtcaaaaattggggtatgaca 36454627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 40014941 - 40014876
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  40014941 cagagatcgatcagagtcaagtgacatgtgtcagtgggaccttaagtcaaaaattggggtatgaca 40014876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 37048409 - 37048344
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||| || |||||||    
T  37048409 cagagatcgatcagagtcaagtgacacgtgtcagtgggatcttaggtcaaaaatttgggtatgaca 37048344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 25042281 - 25042335
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaatt 68  Q
    |||||||||| ||||||||||||||| || ||||||| |||||||||||||||||    
T  25042281 cagagatcgaacagagtcaagtgacacgtatcagtggagccttaggtcaaaaatt 25042335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 21688192 - 21688153
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  21688192 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 21688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 21696111 - 21696072
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  21696111 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 21696072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 26553292 - 26553331
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  26553292 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 26553331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 11939621 - 11939679
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  11939621 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 11939679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 17948023 - 17947982
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  17948023 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 17947982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 21808311 - 21808344
Alignment:
Q  48 tggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||| |||||||||||||||||||||||||||||    
T  21808311 tgggaccttaggtcaaaaattgggatatgacaat 21808344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 29901266 - 29901229
Alignment:
Q  42 tgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  29901266 tgtcagtgggaccttaggtcaaaaattggggtatgaca 29901229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 11953545 - 11953605
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||| ||||||||||| |||||||||||  ||| | |||||| ||||| |||||||||    
T  11953545 cgatcagggtcaagtgacacgtgtcagtgggaacttggatcaaaatttggggtatgacaat 11953605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 25677884 - 25677928
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||    
T  25677884 tgacatgtgtcggtgtgaccttaggtcaaaaattggggtatgaca 25677928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 20548446 - 20548379
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20548446 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaat 20548379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 19738009 - 19738074
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19738009 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19738074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 20555070 - 20555005
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20555070 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20555005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 50187848 - 50187781
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50187848 cagagattgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaat 50187781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 3382445 - 3382510
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  3382445 cagagatcgagcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 3382510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 39745430 - 39745487
Alignment:
Q  23 atcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39745430 atcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 39745487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 3389196 - 3389258
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  3389196 agatcgatcagtatcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 3389258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 22175845 - 22175903
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  22175845 cgatcagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattggggtatgaca 22175903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 3439683 - 3439629
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatg 76  Q
    |||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  3439683 gatcagtgtcaaatgacatgcgtcagtgggaccttaggtcaaaaattgggatatg 3439629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 25984434 - 25984368
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||| ||||| |||||  |||| ||||||||||| |||||||| |||||||||| ||||||||    
T  25984434 cagagatcaatcagcgtcaaacgacacgtgtcagtgggaccttaggttaaaaattggggtatgacaa 25984368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 4619285 - 4619216
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaattg 83  Q
    ||||||| |||||| || || ||||||||||||||||    ||||||||||||||||| |||||||||||    
T  4619285 cagagattgatcagggttaaatgacatgtgtcagtggtattttaggtcaaaaattggggtatgacaattg 4619216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 13100709 - 13100664
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaattggt 85  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  13100709 tgtgtcagtggggccttaggtcaaaatttggggtatgacagttggt 13100664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 14925062 - 14924997
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| |||||| || ||| |||| ||||||||||| |||||||| |||||||||| |||||||    
T  14925062 cagagattgatcagggttaagcgacacgtgtcagtgggaccttaggtaaaaaattggggtatgaca 14924997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 15580490 - 15580547
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||| ||||| ||||||| |||||||||  |||||||||||||||||| |||||||    
T  15580490 gatcagggtcaaatgacatgcgtcagtgggatcttaggtcaaaaattggggtatgaca 15580547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 39534232 - 39534175
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||| |||||||||||  ||| |||||||||||||| |||||||    
T  39534232 gatcagagtcaaatgacacgtgtcagtgggatcttgggtcaaaaattggggtatgaca 39534175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 55793251 - 55793295
Alignment:
Q  36 gacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||    
T  55793251 gacaagtgtcagtgggaccttaggtcaaaaattggggtatgacaa 55793295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 10220457 - 10220504
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaatt 82  Q
    ||||| |||||||||  |||||||||||||||||||| ||||||||||    
T  10220457 tgacacgtgtcagtgctgccttaggtcaaaaattggggtatgacaatt 10220504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 15880072 - 15880110
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  15880072 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 15880110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 47522581 - 47522650
Alignment:
Q  14 cagagatcgatcagagtc--aagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||| ||||||||   ||||||||  ||| |||||| ||||||||||||||||| |||||||||||    
T  47522581 cagagatcaatcagagtgttaagtgacaaatgttagtgggaccttaggtcaaaaattgagatatgacaat 47522650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 12427175 - 12427135
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  12427175 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 12427135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 41149018 - 41148978
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  41149018 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 41148978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 22111 - 22045
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22111 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 22045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 12667538 - 12667604
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12667538 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 12667604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 18960997 - 18961062
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18960997 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 18961062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 28702888 - 28702953
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28702888 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 28702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 20459459 - 20459534
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaattggtattt 89  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||    
T  20459459 cagagatcaatcagagtcaagtgacatgtgtcactggggccttaggtcaaaaattggggtatgacaattggcattt 20459534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 19713745 - 19713679
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19713745 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 19713679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 20452658 - 20452723
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  20452658 cagagatcgatcagagtcaagtgacatgtgtcagtggagccttaggtcaaaaattggggtatgaca 20452723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 14176988 - 14176923
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14176988 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggg-tatgacaa 14176923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 19719901 - 19719836
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  19719901 cagagatcaatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19719836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 22779140 - 22779205
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  22779140 cagagatcgatcagagtcaagtgacacgtgtcagtggggcattaggtcaaaaattggggtatgaca 22779205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 17784071 - 17784137
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||||||||    
T  17784071 cagagatcgatcagagtcgagtgacatgtgtcagtggagccttaggtcaaaaattggtgtatgacaa 17784137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 26896523 - 26896467
Alignment:
Q  23 atcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  26896523 atcagagttaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 26896467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 10985075 - 10985132
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggg 71  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  10985075 cagagatggatcagagtcaagtgacatgtgttagtggggtcttaggtcaaaaattggg 10985132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 19899015 - 19898950
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||    
T  19899015 cagagatcaatcagagtcgagtgacatgtgccagtggggccttaggtcaaaaatttgggtatgaca 19898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 22631751 - 22631684
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaattggtattt 89  Q
    |||||| ||||| ||||||| ||||||| | ||||||||||||||||||| ||||||| | |||||||    
T  22631751 gatcagggtcaaatgacatgcgtcagtgtgaccttaggtcaaaaattggggtatgacagtgggtattt 22631684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 15666265 - 15666330
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| |||||| || ||| |||| |||| |||||| ||||||||||||||||||| |||||||    
T  15666265 cagagattgatcagggttaagcgacacgtgttagtgggcccttaggtcaaaaattggggtatgaca 15666330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 24150082 - 24150122
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  24150082 tgtgtcagtgggaccttaggtcaaaaattggggtatgacaa 24150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 19169145 - 19169106
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  19169145 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 19169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 24143592 - 24143631
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  24143592 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 24143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 615926 - 615984
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  615926 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 615984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 623827 - 623885
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  623827 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 623885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 20058867 - 20058905
Alignment:
Q  43 gtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  20058867 gtcagtgggaccttaggtcaaaaattggggtatgacaat 20058905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 21961664 - 21961606
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||| ||||| ||||||| || |||||  ||||||||||||||||||| ||||||||    
T  21961664 gatcagtgtcaaatgacatgcgttagtggaaccttaggtcaaaaattggggtatgacaa 21961606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 8275543 - 8275502
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  8275543 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 8275502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 16031259 - 16031325
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16031259 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 16031325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 13111787 - 13111852
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13111787 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 13111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 14893146 - 14893211
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14893146 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 14893211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 21638561 - 21638626
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21638561 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 21638626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4313596 - 4313660
Alignment:
Q  15 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4313596 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 4313660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 261426 - 261364
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  261426 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 14888041 - 14888107
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  14888041 cagagatcgatcagagtcaagtgacatgtgtcagtggagccttaggtcaaaaattggggtatgacaa 14888107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 13105639 - 13105704
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  13105639 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattagggtatgaca 13105704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 14881315 - 14881380
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  14881315 cagagatcgatcagagtcaagtgacatgtgtcggtggggccttaggtcaaaaattggggtatgaca 14881380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 23288122 - 23288187
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  23288122 cagagatcgatcagagtcaagtgacatgtgtaagtggggccttaggtcaaaaattggggtatgaca 23288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 30102452 - 30102517
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  30102452 cagagatcgatcagagtcaagtgacatgtatcagtggggccttaagtcaaaaattgggatatgaca 30102517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11180825 - 11180760
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||    
T  11180825 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggttaaaaattggggtatgaca 11180760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 48060734 - 48060795
Alignment:
Q  18 gatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  48060734 gatcgatcagagtcaagtgacatgtgtcagtgaggccttaggtcaaaaattggggtatgaca 48060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 68207 - 68145
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  68207 agatcgatcagagtcaagtgacatgtgccagtggggcgttaggtcaaaaattggggtatgaca 68145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 74300 - 74238
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  74300 agatcgatcagagtcaagtgacatgtgccagtggggcgttaggtcaaaaattggggtatgaca 74238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12550476 - 12550412
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgac 78  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  12550476 cagagatcgatcggagtcgagtgacatgtgtcactggggccttaggtcaaaaattggggtatgac 12550412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 3404817 - 3404752
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||| |||||||    
T  3404817 cagagatcgattagagtcgaatgacatgtgtcagtggggccttaggtaaaaaattggggtatgaca 3404752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 8612687 - 8612622
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||| |||||||    
T  8612687 cagagatcgatcagagtcgagtgacatgtctcagtgggctcttaggtcaaaaattggggtatgaca 8612622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 8606227 - 8606160
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||||||| |||||| |||||||||| ||||||||  |||||||||||||||||| |||||||||    
T  8606227 cagagatcgattagagtcgagtgacatgtttcagtgggctcttaggtcaaaaattggggtatgacaat 8606160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 49967413 - 49967354
Alignment:
Q  20 tcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  49967413 tcgatcagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattagggtatgaca 49967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 37470197 - 37470141
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatga 77  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  37470197 cgatcagggtcaagtgacacgtgttagtggggccttaggtcaaaaattggggtatga 37470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 13086611 - 13086554
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||| ||||| |||||||||| |||||| ||||||||||||||||||| |||||||    
T  13086611 gatcagggtcaaatgacatgtgttagtgggaccttaggtcaaaaattggggtatgaca 13086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 13509414 - 13509479
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||| ||||  | ||||||||| ||||||||||||| || || |||||||    
T  13509414 cagagatcgatcagagtcaaatgacgcgcgtcagtgggaccttaggtcaaaatttagggtatgaca 13509479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 18706310 - 18706267
Alignment:
Q  36 gacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||    
T  18706310 gacacgtgtcagtgggaccttaggtcaaaaattggggtatgaca 18706267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 20603997 - 20604055
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  20603997 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 20604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 21607491 - 21607449
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaatt 82  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||    
T  21607491 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaatt 21607449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 30068681 - 30068743
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||  |  |||||||| ||||||||||||| || || |||||||    
T  30068681 agatcgatcagagtcaagtgacgcgcatcagtgggaccttaggtcaaaatttagggtatgaca 30068743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 37256102 - 37256160
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  37256102 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 37256160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 37265938 - 37265996
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  37265938 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 37265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 15537758 - 15537799
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  15537758 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 15537799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 15610489 - 15610554
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||| || || ||| |||| | ||||||||| ||||||||||||||||||| |||||||    
T  15610489 cagagattgattagggttaagcgacacgcgtcagtgggaccttaggtcaaaaattggggtatgaca 15610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 11630009 - 11630049
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  11630009 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 11630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 33814598 - 33814634
Alignment:
Q  44 tcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  33814598 tcagtgggaccttaggtcaaaaattggggtatgacaa 33814634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 46371211 - 46371171
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  46371211 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 46371171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 20279332 - 20279398
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20279332 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 20279398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 38084468 - 38084535
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38084468 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaat 38084535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 11873747 - 11873681
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  11873747 cagagatcgatcagagtcaagtgacatgtgtcagtggggtcttaggtcaaaaattggggtatgacaa 11873681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 18289 - 18354
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18289 cagagatcgatcagagtcaagtgacatgtctcagtggggccttaggtcaaaaattggggtatgaca 18354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 18500291 - 18500226
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  18500291 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttagatcaaaaattggggtatgaca 18500226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 36735398 - 36735332
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36735398 cagagatggatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 36735332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 5874252 - 5874319
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  5874252 cagagatcgatcagagtcgagtgacatgtgtcagtggacccttaggtcaaaaattggggtatgacaat 5874319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 5871111 - 5871176
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  5871111 cagagatcgatcagagtcgagtgatatgtgtcagtgggcccttaggtcaaaaattggggtatgaca 5871176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 29586139 - 29586096
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggcctta 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29586139 cagagatcgatcagagtcaagtgacatgtgtcagtggggcctta 29586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 12370462 - 12370521
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||| |||||||||||  ||| |||||||||||||| |||||||||    
T  12370462 gatcagagtcaaatgacacgtgtcagtgggatcttgggtcaaaaattggggtatgacaat 12370521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 22518985 - 22519028
Alignment:
Q  36 gacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||    
T  22518985 gacacgtgtcagtgggaccttaggtcaaaaattggggtatgaca 22519028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 25036877 - 25036922
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||| ||| | ||||||||||||||||||| ||||||||    
T  25036877 tgacatgtgtcggtgtgaccttaggtcaaaaattggggtatgacaa 25036922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 25040984 - 25041029
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||| ||| | ||||||||||||||||||| ||||||||    
T  25040984 tgacatgtgtcggtgtgaccttaggtcaaaaattggggtatgacaa 25041029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 39649705 - 39649664
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  39649705 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 39649664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 13038973 - 13039013
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||| ||||| |||||||||||||||||| |||||||||    
T  13038973 gtgtcaatggggtcttaggtcaaaaattggggtatgacaat 13039013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 96847 - 96782
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  96847 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 96782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 14891862 - 14891927
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14891862 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 14891927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 22162987 - 22163053
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  22162987 cagagatcgatcagagtcaagtgacatgtgtcagtgggcccttaggtcaaaaattggggtatgacaa 22163053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 15061336 - 15061402
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  15061336 cagagatcgatcagagttaagtgacacgtgtcagtggggccttaggtcaaaaattggggtatgacaa 15061402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 25859275 - 25859341
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25859275 cagagatcgatcagagtcgagtgacatgtgacagtggggccttaggtcaaaaattggggtatgacaa 25859341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 20733225 - 20733160
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  20733225 cagagatcgatcagagtcaagtgacacgtgtcaatggggccttaggtcaaaaattggggtatgaca 20733160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 22156978 - 22157043
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  22156978 cagagatcgatcagagtcaagtgacatgtgttagtgggcccttaggtcaaaaattggggtatgaca 22157043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 32025654 - 32025720
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  32025654 cagagatcgatcagaatcgagtgacatgtgtcagtggggtcttaggtcaaaaattggggtatgacaa 32025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 20725263 - 20725198
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| || |||||||    
T  20725263 cagagatcgatcagagtcaagtgacacgtgttagtcgggccttaggtaaaaaatttgggtatgaca 20725198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 20738161 - 20738096
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| || |||||||    
T  20738161 cagagatcgatcagagtcaagtgacacgtgttagtcgggccttaggtaaaaaatttgggtatgaca 20738096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 25853031 - 25853095
Alignment:
Q  15 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||  |||||||| | |||||||    
T  25853031 agagatcgatcagagtcgagtgacatgtgtcagtggggccgtaggcaaaaaattgaggtatgaca 25853095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 31999828 - 31999762
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| ||| ||||||||||  |||  |||||||||||||||||| ||||||||    
T  31999828 cagagatcgatcagagtcgagttacatgtgtcaacgggatcttaggtcaaaaattggggtatgacaa 31999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 24487931 - 24487982
Alignment:
Q  29 gtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  24487931 gtcaaatgacatgcgtcagtgggaccttaggtcaaaaattggggtatgacaa 24487982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 32006795 - 32006734
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||| ||||| |||||||||  ||| |||||||||||||||||| |||||||    
T  32006795 agatcgatcagagtcgagtgatatgtgtcag-cgggtcttaggtcaaaaattggggtatgaca 32006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 6030905 - 6030856
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggg 71  Q
    |||||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  6030905 gatcagggtcaaatgacatgcgtcagtgggaccttaggtcaaaaattggg 6030856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12307679 - 12307737
Alignment:
Q  21 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||||||||||| |||||||||||  ||| |||||||| ||||| |||||||    
T  12307679 cgatcagggtcaagtgacacgtgtcagtgggatcttgggtcaaaatttggggtatgaca 12307737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 45469510 - 45469472
Alignment:
Q  43 gtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  45469510 gtcagtgaggccttaggtcaaaaattggggtatgacaat 45469472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 18433069 - 18433028
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  18433069 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 18433028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 15707177 - 15707137
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  15707177 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 15707137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 23267953 - 23267993
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  23267953 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 23267993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 19367540 - 19367475
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19367540 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19367475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 35070100 - 35070035
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35070100 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 35070035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 20429418 - 20429351
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  20429418 cagagatcgatcagagtcaagtgacaagtgtcagtgggaccttaggtcaaaaattggggtatgacaat 20429351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 44832556 - 44832623
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  44832556 cagagatcgatcagagtcaagtgacatgtgtcagtgaagccttaggttaaaaattgggatatgacaat 44832623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 1961703 - 1961638
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  1961703 cagagatcgatcagagtcaagtgttatgtgtcagtggggccttaggtcaaaaattggggtatgaca 1961638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 18098440 - 18098375
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  18098440 cagagatcgatcagagtcaagtgacatgtgttagtggggccttaggttaaaaattggggtatgaca 18098375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 22116351 - 22116416
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  22116351 cagagatcgatcagagttgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 22116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 47108438 - 47108372
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||    
T  47108438 cagagatcgatcagagtcaagtgacatgtgtaagtgggaccttaggttaaaaattaggatatgacaa 47108372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 1955883 - 1955829
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaatt 68  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  1955883 cagagatcgatcagagtcaagtgatacgtgtcagtggggccttaggtcaaaaatt 1955829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 2336072 - 2336122
Alignment:
Q  29 gtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2336072 gtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 2336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 16884561 - 16884516
Alignment:
Q  36 gacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  16884561 gacacgtgtcagtggggccttaggtcaaaaattggggtatgacaat 16884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 39454438 - 39454379
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||| ||||| ||||||| ||||||| | ||||||||||||||||||| |||||||||    
T  39454438 gatcagggtcaaatgacatgcgtcagtgtgaccttaggtcaaaaattggggtatgacaat 39454379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 22840176 - 22840215
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  22840176 gtgtcagtgggaccttaggtcaaaaattggggtatgacaa 22840215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 13450100 - 13450035
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||| ||||  | ||||||||| ||||||||||||| || || |||||||    
T  13450100 cagagatcgatccgagtcaaatgacgcgcgtcagtgggaccttaggtcaaaatttagggtatgaca 13450035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 20979997 - 20980038
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  20979997 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 20980038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 20518331 - 20518279
Alignment:
Q  29 gtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    ||||| ||||||| || ||||||  |||||||||||||||||| |||||||||    
T  20518331 gtcaaatgacatgcgttagtgggatcttaggtcaaaaattggggtatgacaat 20518279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25926805 - 25926845
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  25926805 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 25926845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1922 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1922
Description:

Target: scaffold1922; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 216 - 282
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  216 cagagatcgatcagagtcaagtgacatgtgtcagtggggcattaggtcaaaaattggggtatgacaa 282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 38599 - 38665
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38599 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 38665  T

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Target: scaffold0085 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 7799 - 7865
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  7799 cagagatcgatcagagtcaagtgacatgtgttagtggggccttaggtcaaaaattggggtatgacaa 7865  T

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Target: scaffold0473 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 9163 - 9228
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  9163 cagagatcgatcagagtcaagtgacatgtgtcagtgaggccttaggtcaaaaattggggtatgaca 9228  T

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Target: scaffold0320 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6321 - 6386
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  6321 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggacaaaaattggggtatgaca 6386  T

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Target: scaffold0050 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 27716 - 27781
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27716 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 27781  T

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Target: scaffold0028 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 65903 - 65838
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  65903 cagagatcgatcagagtcaagtgacatgtgtgagtggggccttaggtcaaaaattggggtatgaca 65838  T

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Target: scaffold0351 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 7641 - 7708
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  7641 cagagatcgatcagagtcaagtgacaagtgtcagtggggccttaggtcaaaaattagggtatgacaat 7708  T

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Target: scaffold0046 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 86697 - 86763
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||    
T  86697 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattagggtatgacaa 86763  T

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Target: scaffold0253 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 10404 - 10339
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  10404 cagagatcgatcagagtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 10339  T

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Target: scaffold0253; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 19829 - 19764
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  19829 cagagatcgatcagagtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 19764  T

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Target: scaffold0630 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1378 - 1434
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgg 70  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1378 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattgg 1434  T

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Target: scaffold0039 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 89874 - 89937
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatga 77  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  89874 cagagatcgataagagtcaagtgacatatgtcagtggggccttaggtcaaaaattggggtatga 89937  T

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Target: scaffold0328 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 177 - 243
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  177 cagagatcgatcagagtcgagtgacaagtgtcagtgaggccttaggtcaaaaattggggtatgacaa 243  T

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Target: scaffold0306 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 15706 - 15644
Alignment:
Q  17 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  15706 agatcgatcagagtcaagtgacatgtgtcagtggggccttagaacaaaaattggggtatgaca 15644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 38088 - 38138
Alignment:
Q  29 gtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  38088 gtcaagtgacacgtgtcagtggggccttaggtcaaaaattggggtatgaca 38138  T

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Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 20251 - 20210
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||||||||| ||||||||||||| ||||| |||||||||    
T  20251 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaat 20210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 2528 - 2469
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||| ||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  2528 gatcagggtcaaatgacatgcgtcagtgggaccttaggtcaaaaattggggtatgacaat 2469  T

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Target: scaffold0505 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 11527 - 11470
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||| ||||| |||||||||| |||||| ||||||||||||||||||| |||||||    
T  11527 gatcagggtcaaatgacatgtgttagtgggtccttaggtcaaaaattggggtatgaca 11470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 9280 - 9339
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||| ||||| ||||||| ||||||| | ||||||||||||||||||| |||||||||    
T  9280 gatcagggtcaaatgacatgcgtcagtgtgaccttaggtcaaaaattggggtatgacaat 9339  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 30700 - 30765
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||| || || ||| |||| ||||||||||| ||||||||||||||||||| |||||||    
T  30700 cagagattgattagggttaagcgacacgtgtcagtgggaccttaggtcaaaaattggggtatgaca 30765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 41665 - 41730
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| ||| || || ||| |||| |||| |||||| ||||||||||||||||||| |||||||    
T  41665 cagagattgattagggttaagcgacacgtgttagtgggaccttaggtcaaaaattggggtatgaca 41730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1888 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1888
Description:

Target: scaffold1888; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 1058 - 1117
Alignment:
Q  22 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgacaat 81  Q
    |||||| ||||||||||| ||||| |||||  ||| |||||||||||||| |||||||||    
T  1058 gatcagggtcaagtgacacgtgtcggtgggatcttgggtcaaaaattggggtatgacaat 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 1002 - 963
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  1002 tgtgtcagtggggccttaggtcaaaatttggggtatgaca 963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 3374 - 3335
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  3374 gtgtcagtgggaccttaggtcaaaaattggggtatgacaa 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 15854 - 15815
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  15854 gtgtcagtgggaccttaggtcaaaaattggggtatgacaa 15815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 808 - 770
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  808 gtgtcagtgggaccttaggtcaaaaattggggtatgaca 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 16565 - 16604
Alignment:
Q  41 gtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  16565 gtgtcagtgggaccttaggtcaaaaattggggtatgacaa 16604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 17799 - 17838
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  17799 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 17838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 25718 - 25757
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  25718 tgtgtcagtgggaccttaggtcaaaaattggggtatgaca 25757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 150634 - 150689
Alignment:
Q  24 tcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| || |||||||||||||||  | |||||||||||||||||| |||||||    
T  150634 tcagagttaaatgacatgtgtcagtgttgtcttaggtcaaaaattggggtatgaca 150689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 3831 - 3766
Alignment:
Q  14 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||| |||||| || ||| ||||  ||| |||||| ||||||||||||||||||| |||||||    
T  3831 cagagattgatcagggttaagcgacacatgttagtgggcccttaggtcaaaaattggggtatgaca 3766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 391 - 435
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||| |||||||||  | ||||||||||||||||||||||||||    
T  391 tgacacgtgtcagtgctgtcttaggtcaaaaattgggatatgaca 435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 8394 - 8438
Alignment:
Q  35 tgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 79  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||    
T  8394 tgacatgtgtcggtgtgaccttaggtcaaaaattggggtatgaca 8438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 2800 - 2840
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  2800 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 2840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 1754 - 1714
Alignment:
Q  40 tgtgtcagtggggccttaggtcaaaaattgggatatgacaa 80  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  1754 tgtgtcagtgggaccttaggtcaaaatttggggtatgacaa 1714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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