View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_1 (Length: 1301)

Name: NF8921_low_1
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_1
NF8921_low_1
[»] chr6 (5 HSPs)
chr6 (17-1292)||(33839513-33840789)
chr6 (157-1082)||(33843633-33844570)
chr6 (17-216)||(33843433-33843632)
chr6 (1165-1259)||(33844632-33844727)
chr6 (300-416)||(10812039-10812155)
[»] chr4 (28 HSPs)
chr4 (43-482)||(35968715-35969154)
chr4 (44-480)||(36636190-36636626)
chr4 (290-481)||(55966540-55966731)
chr4 (290-423)||(36910013-36910146)
chr4 (290-428)||(36665402-36665540)
chr4 (291-423)||(18364663-18364795)
chr4 (291-423)||(36598130-36598262)
chr4 (303-423)||(36629780-36629900)
chr4 (290-418)||(36643125-36643253)
chr4 (683-742)||(36668498-36668557)
chr4 (45-117)||(36642844-36642916)
chr4 (46-114)||(38862527-38862595)
chr4 (17-120)||(36910316-36910419)
chr4 (33-123)||(55966081-55966171)
chr4 (45-114)||(18364993-18365062)
chr4 (45-114)||(36597863-36597932)
chr4 (806-882)||(15527286-15527362)
chr4 (797-845)||(18364244-18364292)
chr4 (797-845)||(36598633-36598681)
chr4 (704-739)||(35968452-35968487)
chr4 (704-754)||(35974142-35974192)
chr4 (34-120)||(36612606-36612692)
chr4 (896-934)||(36637042-36637080)
chr4 (45-111)||(36665121-36665187)
chr4 (865-931)||(55967095-55967161)
chr4 (34-123)||(28125562-28125651)
chr4 (797-838)||(35974057-35974098)
chr4 (802-855)||(36656422-36656475)
[»] chr1 (2 HSPs)
chr1 (290-478)||(42602376-42602564)
chr1 (693-754)||(42602782-42602843)
[»] chr3 (7 HSPs)
chr3 (45-112)||(5374954-5375021)
chr3 (798-853)||(25601740-25601795)
chr3 (45-108)||(5356546-5356609)
chr3 (45-108)||(5363188-5363251)
chr3 (45-108)||(5368404-5368467)
chr3 (695-741)||(25601846-25601892)
chr3 (45-108)||(5369222-5369285)
[»] chr7 (2 HSPs)
chr7 (40-110)||(44500704-44500774)
chr7 (798-855)||(44501441-44501498)
[»] chr8 (2 HSPs)
chr8 (797-851)||(35335884-35335938)
chr8 (151-202)||(35336429-35336480)
[»] chr5 (2 HSPs)
chr5 (704-754)||(19658252-19658302)
chr5 (704-754)||(19675091-19675141)


Alignment Details
Target: chr6 (Bit Score: 1139; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 1139; E-Value: 0
Query Start/End: Original strand, 17 - 1292
Target Start/End: Original strand, 33839513 - 33840789
Alignment:
Q  17 aaaacaaagcctcaaatcatggcaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatc 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839513 aaaacaaagcctcaaatcatgccaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatc 33839612  T
Q  117 ataggagacttgtctacttttgaaaacatatgtgcatcaatgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839613 ataggagacttgtctacttttgaaaacatatgtgcatcaatgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccat 33839712  T
Q  217 aaaaagtaaaggtacagagtctcggagcagctagctcgattttgtcaaagttgaataaattcttatacaaatataaattgtctagtgtctcacttgatat 316  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839713 aaaaagtaaaggtgcagagactcggagcagctagctcgattttgtcaaagttgaataaattcttatacaaatataaattgtctagtgtctcacttgatat 33839812  T
Q  317 ccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcacaacggttttcatcaccg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839813 ccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcacaacggttttcatcaccg 33839912  T
Q  417 cagaaggtgaaaccagttagatccaagctggttaacgctggcatattcagatatttcggaaatattactgtatcaggaaaaatgcaatcattgtaaatcg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||    
T  33839913 cagaaggtgaaaccagttagatccaagctggttaacgctggcatattcagatatttcggaaa------tgtatcaggaaaaatgcaaccattgtaaatcg 33840006  T
Q  517 aaagtgtcagagatgtaagagcccgacatgaggacacacatggcataaggagatcactatcatgagaaatagagattcctaattgttggatttgtgtatt 616  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840007 aaagcgtcagagatgtaagagcctgacatgaggacacacatggcataaggagatcactatcatgagaaatagagattcctaattgttggatttgtgtatt 33840106  T
Q  617 atgggaacacgcgtaatttaaaattttttggagcagttcagactcgtaatcgctatcgcactcagaatcaagaatgtgcaatgcagctgagttatcacga 716  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33840107 atgggaacacgcgtaatttaaaattttttggaccagttcagactcgtaatcgctatcgcactcaaaatcaagaatgtgcaatgcagctgagttatcacga 33840206  T
Q  717 agagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaggttgaggaatgcnnnnnnngttctggaatacgtttccaaagat 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||    
T  33840207 agagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaagttgaggaatgcaaaaaaagttctggaatacgtttccaaagat 33840306  T
Q  817 gtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtct 916  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840307 gtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtct 33840406  T
Q  917 gtcttcactttcttcgttttcggagtga---cttctcttcatcttttctcgaatcattaagctnnnnnnnggaaca----agatatatggaattacattc 1009  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||       ||||||    ||||||||||||||||||||    
T  33840407 gtcttcactttcttcgttttcggagtgacttcttctcttcatcttttctcgaatcattaagctaaaaaaaggaacaagatagatatatggaattacattc 33840506  T
Q  1010 aatataacataacaagaaaatgagcaattacaaaactggggaaagaaaacctagaacagttttctttgaataactcatgtggtcctttaagtaagatgga 1109  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840507 aatataacataacaagaaaatgagcaattataaaactggggaaagaaaacctagaacagttttctttgaataactcatgtggtcctttaagtaagatgga 33840606  T
Q  1110 tgtttgtaacaaattagtcttttaattcttttctttttgcaaattagtccttcgagtaagtcataaactatttacattgttaccattttcattcaacttc 1209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840607 tgtttgtaacaaattagtcttttaattcttttctttttgcaaattagtccttcgagtaagtcataaactatttacattgttaccattttcattcaacttc 33840706  T
Q  1210 cttaaaacatgattaccttatcgttgccgttaccatttaaaattgatgtgaccggtccaaaaaatgtttatataacaccaaac 1292  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840707 gttaaaacatgattaccttatcgttgccgttaccatttaaaattgatgtgaccggtccaaaaaatgtttatataacaccaaac 33840789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 157 - 1082
Target Start/End: Original strand, 33843633 - 33844570
Alignment:
Q  157 tgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccataaaaagtaaaggtacagagtctcggagcagctagctcgat 256  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| | | |||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  33843633 tgtttacttctttaacagaagaaaatccactcgcatatattttctgatcaagagtaccacaaaaagtaaaggtacaaagattcggagcagctagctcgat 33843732  T
Q  257 tttgtcaaagttgaataaattcttatacaaatataaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatg 356  Q
    |||||  |||| ||||||||| | |  || | ||||| |||||||||||| ||||||||||| ||||||||||||||||||||  ||||||    |||||    
T  33843733 tttgttgaagtcgaataaattataactcatagataaactgtctagtgtcttacttgatatcctgaggatttgtgcatccttaataatacaatccttaatg 33843832  T
Q  357 atcaagctattcaacttggtaaaggctgaaaagggctcagcacaacggttttcatcaccgcagaaggtgaaaccagttagatccaagctggttaacgctg 456  Q
    | |||| ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||  |||| ||||||| ||||||||||    
T  33843833 agcaagttattcaacttggtaaaggcagaaaagggctcagcacaaccattttcatcaccgcagaaggtaaaaccaactagacccaagctagttaacgctg 33843932  T
Q  457 gcatattcagatatttcggaaatattactgtatcaggaaaaatgcaatca------ttgtaaatcgaaagtgtcagagatgtaagagcccgacatgagga 550  Q
    ||| ||||||| ||||||||||||||| ||| |||||| |||    || |      | ||||| ||||||  ||||||||||||||||| ||||||| ||    
T  33843933 gcaaattcagagatttcggaaatattattgtctcaggataaacaacatgacggatgtggtaaaccgaaagcatcagagatgtaagagccagacatgaaga 33844032  T
Q  551 cacacatggcataaggagatcactatcatgagaaatagagattcctaattgttggatttgtgtattatgggaacacgcgtaatttaaaattttttggagc 650  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||| ||| |    
T  33844033 cacacatggcataaggagatcactatcacgagtaatagagattcctaattgttggatttgggtattatgggaacgaacgtaatttaaaatttttgggacc 33844132  T
Q  651 agttcagactcgtaatcgctatcgcactcagaatcaagaatgtgcaatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaatt 750  Q
    ||||||||||||| |||  |||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33844133 agttcagactcgtgatcagtatcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaatcttagacacgaatgtcaaaaatt 33844232  T
Q  751 gcttttcttttccacggaataaggttgaggaatgcnnnnnnngttctggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaac 850  Q
     ||  || |    || |||||| ||||||||| ||       |||  |||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  33844233 tctcgtcctccaaacagaataaagttgaggaacgcaacaaaagtttaggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaac 33844332  T
Q  851 agcgtattctattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtctgtcttcactttcttcgttttcggagtga---ctt 947  Q
     |||| |||  || ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||   |||    
T  33844333 ggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagtcgggtaagtcacttagtctatcttcactttcttcgttttcagagcgacttctt 33844432  T
Q  948 ctcttcatcttttctcgaatcattaagctnnnnnnnggaacaagatatatggaattaca---ttcaatataacataacaagaaaatgagcaattacaaaa 1044  Q
    |||||||| || ||||||| |||||| ||       ||||||||||| ||||||||| |   |||||||||||||||||||||||| |||||||||||||    
T  33844433 ctcttcattttatctcgaaacattaaccttgaaaaaggaacaagataaatggaattaaattcttcaatataacataacaagaaaataagcaattacaaaa 33844532  T
Q  1045 ctggggaaagaaaacctagaacagttttctttgaataa 1082  Q
     ||| | || |||||||| |||| |||||||| |||||    
T  33844533 ttggaggaaaaaaacctaaaacatttttctttaaataa 33844570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 33843433 - 33843632
Alignment:
Q  17 aaaacaaagcctcaaatcatggcaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatc 116  Q
    |||| |||||| ||||||||| ||| |||||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  33843433 aaaataaagccgcaaatcatgccaaggtacctgaagagtttttgaagtgactgttaatgattctaagttagcaaggtctagcagccagcataatagaatc 33843532  T
Q  117 ataggagacttgtctacttttgaaaacatatgtgcatcaatgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccat 216  Q
    |||||||||||||| | || ||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||    
T  33843533 ataggagacttgtcgaattctgaaaacatttttgcatcaatgtttacttctttaacagaagaaaatccactcccatatattttctgatcaggagtaccat 33843632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1165 - 1259
Target Start/End: Original strand, 33844632 - 33844727
Alignment:
Q  1165 gtaagtcataaactatttacattgttacca-ttttcattcaacttccttaaaacatgattaccttatcgttgccgttaccatttaaaattgatgtg 1259  Q
    |||||||||||||||||||||||||||||| ||||||  || |||| |||||||||| ||||||| ||||| |||||| |||||||||||| ||||    
T  33844632 gtaagtcataaactatttacattgttaccatttttcaaccatcttcgttaaaacatgcttaccttgtcgttaccgttaacatttaaaattgttgtg 33844727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 10812039 - 10812155
Alignment:
Q  300 agtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcac 399  Q
    |||||||||||||||||   || ||||||||  ||| | ||| |||||| || ||||||||| || ||||| ||||||||||| || |||||||| |||     
T  10812039 agtgtctcacttgatatgttgatgatttgtgtgtccattaccttacaaccacgaatgatcaaactcttcaatttggtaaaggccgagaagggctctgcat 10812138  T
Q  400 aacggttttcatcaccg 416  Q
    | | ||||||| |||||    
T  10812139 agccgttttcaccaccg 10812155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 1e-41; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 43 - 482
Target Start/End: Complemental strand, 35969154 - 35968715
Alignment:
Q  43 gtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatcataggagacttgtctacttttgaaaa 142  Q
    |||||||||||||| ||||||||||| | ||||||| ||  || || ||||||||||||||||| ||||||| |||||||||||  || |  ||||||      
T  35969154 gtacctgaagagtaattgaagagactatcaatgattttacattggcgaggtctagcagccagctcaatagaaccataggagactcctcaaaatttgaatg 35969055  T
Q  143 catatgtgcatcaatgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccataaaaagtaaaggtacagagtctcgga 242  Q
    ||| | ||||||||| ||||||| |||||| |||||||  || ||||||||||||||||| |||||| ||||   || ||||||||| || || || |||    
T  35969054 catttttgcatcaatatttacttgtttaacagaagaaagaccgctcccacatattttctgattaggaataccggtaatagtaaaggtgcaaagactagga 35968955  T
Q  243 gcagctagctcgattttgtcaaagttgaataaattcttatacaaatataaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaacca 342  Q
    | ||  | ||| |||| |  ||| ||  || |||| | || || |  ||||| | | ||||||||||||||||||  ||||||||| |||||||  | |     
T  35968954 gtagacaactcaatttgggaaaaattagatgaattatgatgcatagctaaatcgacaagtgtctcacttgatatcttgaggatttgagcatcctctatct 35968855  T
Q  343 tacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcacaacggttttcatcaccgcagaaggtgaaaccagttagatccaa 442  Q
    ||||||    || || ||| ||||||||||| |||||||| |||||||| ||| |||| | ||||| |||||| || |||| ||||   |||||||||||    
T  35968854 tacaaccgtaaaggaccaaactattcaacttagtaaaggcggaaaaggggtcaacacagccgtttttatcaccccaaaaggcgaaatttgttagatccaa 35968755  T
Q  443 gctggttaacgctggcatattcagatatttcggaaatatt 482  Q
    |||||| || ||||||| ||||| |||||| |||||||||    
T  35968754 gctggtcaatgctggcaaattcaaatattttggaaatatt 35968715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 44 - 480
Target Start/End: Original strand, 36636190 - 36636626
Alignment:
Q  44 tacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatcataggagacttgtctacttttgaaaac 143  Q
    |||| |||||||| ||||||||||  | ||||||| ||  || ||||||| ||||||||||  ||||||||||| ||||| ||  ||   | ||||||||    
T  36636190 tacccgaagagtagttgaagagaccatcaatgattttacattggcaaggtttagcagccagtcgaatagaatcaaaggaggctcatcccatcttgaaaac 36636289  T
Q  144 atatgtgcatcaatgtttacttctttaacggaagaaaatccactcccacatattttctgtttaggagtaccataaaaagtaaaggtacagagtctcggag 243  Q
    || | ||| | ||| ||||||| ||| || |||||||  ||||||||||||||||||||   ||||||||||  ||||||||||||||| || || ||||    
T  36636290 atttctgctttaatctttacttgtttgacagaagaaagaccactcccacatattttctgaacaggagtaccagtaaaagtaaaggtacaaagacttggag 36636389  T
Q  244 cagctagctcgattttgtcaaagttgaataaattcttatacaaatataaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccat 343  Q
    ||  || ||| |||||  ||||||    | |||  |||  ||  |  |||||| | || || ||||||||||||| |||||||||||||||| | ||| |    
T  36636390 cacataactcaatttttgcaaagtcttctgaataattacgcattttaaaattgacaagggtttcacttgatatcctgaggatttgtgcatcccttaccct 36636489  T
Q  344 acaacgactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcacaacggttttcatcaccgcagaaggtgaaaccagttagatccaag 443  Q
    ||||| || ||||| ||| ||| ||||||||| ||||||  ||||||||||||||||||  |||||| ||||||| ||| |||||   |||||||  |||    
T  36636490 acaactacgaatgaccaaactagtcaacttgggaaaggccaaaaagggctcagcacaaccattttcaccaccgcaaaagttgaaatttgttagatataag 36636589  T
Q  444 ctggttaacgctggcatattcagatatttcggaaata 480  Q
     ||||||| | ||||| ||||| | |||| |||||||    
T  36636590 ttggttaatgttggcaaattcaaagattttggaaata 36636626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 290 - 481
Target Start/End: Original strand, 55966540 - 55966731
Alignment:
Q  290 taaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaag 389  Q
    ||||||| ||||||||| ||||||||||| ||| |||||||||||| | |||  ||||  || ||||| ||| ||| |||||||||||||| |  |||||    
T  55966540 taaattgcctagtgtctaacttgatatcctgagaatttgtgcatcccttacctcacaaacacgaatgaccaaactactcaacttggtaaagcccaaaaag 55966639  T
Q  390 ggctcagcacaacggttttcatcaccgcagaaggtgaaaccagttagatccaagctggttaacgctggcatattcagatatttcggaaatat 481  Q
    ||||||||||||| ||||||||||||||||||| |||||    |||||  |||||||||||| ||||||| | ||||| |||||||||||||    
T  55966640 ggctcagcacaaccgttttcatcaccgcagaagatgaaagtttttagactcaagctggttaatgctggcaaaatcagagatttcggaaatat 55966731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 36910146 - 36910013
Alignment:
Q  290 taaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaag 389  Q
    ||||||| | |||||||||||||||||   ||||||||| |||||||| |||  ||| | |||||||| ||| ||||||||||||||||||||  |||||    
T  36910146 taaattgacaagtgtctcacttgatatgttgaggatttgagcatcctttacctcacagctactaatgaccaaactattcaacttggtaaaggcgaaaaag 36910047  T
Q  390 ggctcagcacaacggttttcatcaccgcagaagg 423  Q
    ||||||||||||| |||||||  |||||| ||||    
T  36910046 ggctcagcacaaccgttttcactaccgcaaaagg 36910013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 290 - 428
Target Start/End: Original strand, 36665402 - 36665540
Alignment:
Q  290 taaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaag 389  Q
    ||||||| | ||||| |||||||||||   ||||||||| |||||||| ||| |||||| ||||| |  ||| ||||||||| |||||||| | ||||||    
T  36665402 taaattggcaagtgtatcacttgatatggtgaggatttgagcatcctttaccttacaactactaagggccaaactattcaacatggtaaagacggaaaag 36665501  T
Q  390 ggctcagcacaacggttttcatcaccgcagaaggtgaaa 428  Q
    ||||||||||||| | ||||| |||||||||||| ||||    
T  36665502 ggctcagcacaaccgctttcaccaccgcagaaggcgaaa 36665540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 291 - 423
Target Start/End: Complemental strand, 18364795 - 18364663
Alignment:
Q  291 aaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagg 390  Q
    |||||| | ||||||||||||||||| | ||| ||||| ||||| || ||| |||||| |  ||| | ||| ||||||||||||| |||||| |||||||    
T  18364795 aaattgacaagtgtctcacttgatatgctgagaatttgagcatcttttaccttacaaccagaaataaccaaactattcaacttgggaaaggcggaaaagg 18364696  T
Q  391 gctcagcacaacggttttcatcaccgcagaagg 423  Q
    |||||||||||| ||||||| ||||||| ||||    
T  18364695 gctcagcacaaccgttttcaccaccgcaaaagg 18364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 291 - 423
Target Start/End: Original strand, 36598130 - 36598262
Alignment:
Q  291 aaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagg 390  Q
    |||||| | ||||||||||||||||| | ||| ||||| ||||| || ||| |||||| |  ||| | ||| ||||||||||||| |||||| |||||||    
T  36598130 aaattgacaagtgtctcacttgatatgctgagaatttgagcatcttttaccttacaaccagaaataaccaaactattcaacttgggaaaggcggaaaagg 36598229  T
Q  391 gctcagcacaacggttttcatcaccgcagaagg 423  Q
    |||||||||||| ||||||| ||||||| ||||    
T  36598230 gctcagcacaaccgttttcaccaccgcaaaagg 36598262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 303 - 423
Target Start/End: Complemental strand, 36629900 - 36629780
Alignment:
Q  303 gtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaagggctcagcacaac 402  Q
    |||||||||||||| | ||||||||| |||||||| |||  ||||| || || |||||| ||||||||||| |||||||  |||||||||||||||||||    
T  36629900 gtctcacttgatatgctgaggatttgagcatcctttacctcacaactacgaaggatcaaactattcaactttgtaaaggtcgaaaagggctcagcacaac 36629801  T
Q  403 ggttttcatcaccgcagaagg 423  Q
     ||||||| | ||||| ||||    
T  36629800 cgttttcaccgccgcaaaagg 36629780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 418
Target Start/End: Original strand, 36643125 - 36643253
Alignment:
Q  290 taaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaag 389  Q
    ||||||| | |||||||||||||||||   ||||||||| |||||||| | | |||||| || ||||  ||| ||||||||||| | ||||||  |||||    
T  36643125 taaattgacaagtgtctcacttgatatgttgaggatttgagcatcctttatcttacaacaacgaatgcccaaactattcaactttggaaaggccaaaaag 36643224  T
Q  390 ggctcagcacaacggttttcatcaccgca 418  Q
    || |||||||||| | ||||| |||||||    
T  36643225 ggatcagcacaaccgctttcaccaccgca 36643253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 683 - 742
Target Start/End: Original strand, 36668498 - 36668557
Alignment:
Q  683 atcaagaatgtgcaatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgt 742  Q
    |||||||| | ||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  36668498 atcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttagacacaaatgt 36668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 36642844 - 36642916
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatca 117  Q
    |||||||||||| |||||| |||| | ||||||||||  || |||| ||||||||||||||||| ||||||||    
T  36642844 acctgaagagtagttgaagtgactctaaatgattctacattcgcaaagtctagcagccagctgagtagaatca 36642916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 38862527 - 38862595
Alignment:
Q  46 cctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaa 114  Q
    ||||||| |||||||||| ||||| |||||||||||  ||   ||||||||||||||||||||||||||    
T  38862527 cctgaagcgtacttgaagtgactgctaatgattctaaattgagaaggtctagcagccagctgaatagaa 38862595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 36910419 - 36910316
Alignment:
Q  17 aaaacaaagcctcaaatcatggcaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatc 116  Q
    |||| ||||| | ||| |||| ||| |||||||||||||| |||||| |||||  ||||||||||  || ||||||||| ||||| |||| ||||||| |    
T  36910419 aaaataaagcttgaaaacatgacaaggtacctgaagagtagttgaagtgactgccaatgattctacattggcaaggtcttgcagcaagcttaatagaacc 36910320  T
Q  117 atag 120  Q
    ||||    
T  36910319 atag 36910316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 55966081 - 55966171
Alignment:
Q  33 tcatggcaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatcataggag 123  Q
    ||||| ||| |||||||||||||  || |||||||| | ||||||  ||   |||||||||||||||||||||| ||||||| ||||||||    
T  55966081 tcatgccaaggtacctgaagagttgttaaagagactttcaatgatcttacactagcaaggtctagcagccagctcaatagaaccataggag 55966171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 18365062 - 18364993
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaa 114  Q
    |||||||||||| |||||| |||||  ||||||||||  || ||||||||| |||||||||| |||||||    
T  18365062 acctgaagagtagttgaagtgactgccaatgattctacattggcaaggtcttgcagccagcttaatagaa 18364993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 36597863 - 36597932
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaa 114  Q
    |||||||||||| |||||| |||||  ||||||||||  || ||||||||| |||||||||| |||||||    
T  36597863 acctgaagagtagttgaagtgactgccaatgattctacattggcaaggtcttgcagccagcttaatagaa 36597932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 806 - 882
Target Start/End: Original strand, 15527286 - 15527362
Alignment:
Q  806 tttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgt 882  Q
    |||||||| ||| | ||||||  |||||| |||||||||||||||||||| ||   | |||||||||||||||||||    
T  15527286 tttccaaatatgctcccatcttttggacagaatgcaagttcgaacagcgtctttagtgctcaaaaatgacaaaatgt 15527362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 797 - 845
Target Start/End: Complemental strand, 18364292 - 18364244
Alignment:
Q  797 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagtt 845  Q
    |||||| ||||||||||||||||||||||| || ||||||||| |||||    
T  18364292 tggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtt 18364244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 36598633 - 36598681
Alignment:
Q  797 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagtt 845  Q
    |||||| ||||||||||||||||||||||| || ||||||||| |||||    
T  36598633 tggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtt 36598681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 704 - 739
Target Start/End: Complemental strand, 35968487 - 35968452
Alignment:
Q  704 tgagttatcacgaagagtcaaaatcttagacacgaa 739  Q
    |||| |||||||||||||||||||||||||||||||    
T  35968487 tgaggtatcacgaagagtcaaaatcttagacacgaa 35968452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 704 - 754
Target Start/End: Complemental strand, 35974192 - 35974142
Alignment:
Q  704 tgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 754  Q
    |||| ||||||||||||||||||||||| |||||||| ||  |||||||||    
T  35974192 tgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgctt 35974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 36612606 - 36612692
Alignment:
Q  34 catggcaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatcatag 120  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||| ||  |  ||||| ||| ||||||| |||| ||||| |||||    
T  36612606 catgacaaagtacctgaagagtagttgaagaaactgtcaatgattttacatcggcaagatcttgcagccaactgagtagaagcatag 36612692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 896 - 934
Target Start/End: Original strand, 36637042 - 36637080
Alignment:
Q  896 gtcgggtaagtcacttagtctgtcttcactttcttcgtt 934  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  36637042 gtcgggtaagtcactcagcctgtcttcactttcttcgtt 36637080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 36665121 - 36665187
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaata 111  Q
    |||||||||||| ||||||||| || |||||| ||||  || |||| ||||||||||||| ||||||    
T  36665121 acctgaagagtagttgaagagagtgctaatgactctacattggcaaagtctagcagccagttgaata 36665187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 931
Target Start/End: Original strand, 55967095 - 55967161
Alignment:
Q  865 tcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtctgtcttcactttcttc 931  Q
    |||||||||| ||||||| ||  ||||  | ||||||||||||||||  ||||||||||||||||||    
T  55967095 tcaaaaatgataaaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttcactttcttc 55967161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 28125651 - 28125562
Alignment:
Q  34 catggcaaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatagaatcataggag 123  Q
    |||| ||| |||||||||||||| ||||||||| ||| ||||| | ||  || |||||| |||||||||| || ||||||| ||| ||||    
T  28125651 catgccaatgtacctgaagagtagttgaagagaatgtcaatgactttactttggcaaggcctagcagccaactcaatagaaccattggag 28125562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 797 - 838
Target Start/End: Complemental strand, 35974098 - 35974057
Alignment:
Q  797 tggaatacgtttccaaagatgtttccatctggtggacaaaat 838  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  35974098 tggaatacgtttccagagatgtctccatcttgtggacaaaat 35974057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 802 - 855
Target Start/End: Original strand, 36656422 - 36656475
Alignment:
Q  802 tacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 855  Q
    |||||||||| ||||||||||||||  ||||||| | ||||||||| |||||||    
T  36656422 tacgtttccagagatgtttccatctcttggacaacacgcaagttcggacagcgt 36656475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 290 - 478
Target Start/End: Original strand, 42602376 - 42602564
Alignment:
Q  290 taaattgtctagtgtctcacttgatatccggaggatttgtgcatccttaaccatacaacgactaatgatcaagctattcaacttggtaaaggctgaaaag 389  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||| || ||| ||||||  ||||||| ||| ||||||||| |||||||||   |||||    
T  42602376 taaattgacaagtgtctcacttgatatcctgaggatttgtgcatcttttaccgtacaactgctaatgaccaaactattcaacctggtaaaggtcaaaaag 42602475  T
Q  390 ggctcagcacaacggttttcatcaccgcagaaggtgaaaccagttagatccaagctggttaacgctggcatattcagatatttcggaaa 478  Q
    || ||||||| ||  |||||||||||||| ||||  |||   || |||||||||||||| || || |||| ||||| | |||| |||||    
T  42602476 ggttcagcacgaccattttcatcaccgcaaaaggcaaaatttgtgagatccaagctggtcaatgccggcaaattcaaagattttggaaa 42602564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 693 - 754
Target Start/End: Original strand, 42602782 - 42602843
Alignment:
Q  693 tgcaatgcagctgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 754  Q
    |||| ||||| |||| |||||||||||||||||||||||||||| ||| || |||| |||||    
T  42602782 tgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgctt 42602843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 5375021 - 5374954
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatag 112  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  5375021 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatag 5374954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 798 - 853
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  798 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagc 853  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 5356609 - 5356546
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctga 108  Q
    |||||||||||| | ||||||||||| ||||||| ||| || ||||| ||||||||||||||||    
T  5356609 acctgaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctga 5356546  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 5363251 - 5363188
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctga 108  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| || |||||||||||||    
T  5363251 acctgaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctga 5363188  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 5368467 - 5368404
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctga 108  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| || |||||||||||||    
T  5368467 acctgaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctga 5368404  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 695 - 741
Target Start/End: Complemental strand, 25601892 - 25601846
Alignment:
Q  695 caatgcagctgagttatcacgaagagtcaaaatcttagacacgaatg 741  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  25601892 caatgaagctgagctatcacgaagagtcaaaatcttagagacgaatg 25601846  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 5369285 - 5369222
Alignment:
Q  45 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctga 108  Q
    |||||||||||| | ||||||||||| |||||||  || |||||||| ||| ||||||||||||    
T  5369285 acctgaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctga 5369222  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 44500704 - 44500774
Alignment:
Q  40 aaagtacctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaat 110  Q
    ||||||||||||||||| ||| |||||| || ||||||| |||||||||||| ||||| ||||||||||||    
T  44500704 aaagtacctgaagagtagttgtagagaccgtcaatgattttatgttagcaagctctagtagccagctgaat 44500774  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 798 - 855
Target Start/End: Original strand, 44501441 - 44501498
Alignment:
Q  798 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 855  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 44501498  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 797 - 851
Target Start/End: Complemental strand, 35335938 - 35335884
Alignment:
Q  797 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaaca 851  Q
    ||||||||||||||| ||||||||||||||  ||||||||| ||||||| |||||    
T  35335938 tggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaaca 35335884  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 35336480 - 35336429
Alignment:
Q  151 catcaatgtttacttctttaacggaagaaaatccactcccacatattttctg 202  Q
    ||||||||||||||| |||||| |||||||  || |||||||||||||||||    
T  35336480 catcaatgtttacttgtttaacagaagaaagaccgctcccacatattttctg 35336429  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 704 - 754
Target Start/End: Original strand, 19658252 - 19658302
Alignment:
Q  704 tgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 754  Q
    |||| |||||||||||||||||||||||| ||||||| || ||||||||||    
T  19658252 tgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgctt 19658302  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 704 - 754
Target Start/End: Original strand, 19675091 - 19675141
Alignment:
Q  704 tgagttatcacgaagagtcaaaatcttagacacgaatgtgaaaaattgctt 754  Q
    |||| |||||||||||||||||||||||| ||||||| |  ||||||||||    
T  19675091 tgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgctt 19675141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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