View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_10 (Length: 817)
Name: NF8921_low_10
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 15 - 807
Target Start/End: Complemental strand, 3978843 - 3978040
Alignment:
| Q |
15 |
atcagagcatgtagtcaaaattgagtaagagcagcaatgggatgaatcgagtgtcacaccatcataaa----------ccatcaaaatcacttagcagat |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3978843 |
atcagagcatgtagtcaaaattgagtaagagcagcaatgggatgaatcgagtgtcacaccatcataaaacatcataaaccatcaaaatcacttagcagat |
3978744 |
T |
|
| Q |
105 |
acttcataaaggcaaaatccatgacagtcgtacaaaaacttcaaattgaaattgacaaatcaatgcatattgaagcttagttagcttttacatgttgcaa |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978743 |
acttcataaaggcaaaatccatgacagtcgtacaaaaacttcaaattgaaattgacaaatcaatgcatattgaagcttagttagcttttacatgttgcaa |
3978644 |
T |
|
| Q |
205 |
aacaacattataggcttcatgttcctccccaaaatcctgccnnnnnnnnnnnnnnnntacttcaatttacatatagaatgaaaaaagacaccaggaacat |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978643 |
aacaacattataggcttcatgttcctccccaaaatcctgccaaaaaagaaaaagaaatacttcaatttacatatagaatgaaaaaagacaccaggaacat |
3978544 |
T |
|
| Q |
305 |
ttgcatttcaagtgtaagccataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatggaa |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978543 |
ttgcatttcaagtgtaagccataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatggaa |
3978444 |
T |
|
| Q |
405 |
aagtatacccaaaaatcaatacaataaaa-tgatgcaaaaagactgcactagaatggataaagaacaatataagaataaaaattcacaatataaatttgg |
503 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978443 |
aagtatacccaaaaatcaatacaaaaaaaatgacgcaacaagactgcactagaatggataaagaacaatataagaataaaaattcacaatataaatttgg |
3978344 |
T |
|
| Q |
504 |
gaattgggagcaaatggatgtgctcgaggaattgtataaaactaggttaagaatcaaggtcacttacaccagcccactctccaagtgtctttgcacttgg |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978343 |
gaattgggagcaaatggatgtgctcgaggaattgtataaaactaggttaagaatcaaggtcacttacaccagcccactctccaagtgtctttgcacttgg |
3978244 |
T |
|
| Q |
604 |
aactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatcaggttggtcacaatcttcagctagaacacaaagctgtgca |
703 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978243 |
aactgtcaacaagctaacattgtgctctgcgcagagggctttcaccaatttgacataatcaggttggtcacaatcttcagctagaacacaaagctgtgca |
3978144 |
T |
|
| Q |
704 |
gcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactttctaagcaccagctgcagggcagtcatgatgt |
803 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978143 |
gcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactttctaagcaccagctgcagggcagtcatgatgt |
3978044 |
T |
|
| Q |
804 |
ccat |
807 |
Q |
| |
|
|||| |
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|
| T |
3978043 |
ccat |
3978040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 558 - 774
Target Start/End: Original strand, 39233482 - 39233698
Alignment:
| Q |
558 |
caaggtcacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgac |
657 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| || |||| || | || |||||||||||||| ||||| |
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| T |
39233482 |
caagggcacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttcagcacaaagggctttcaccaacttgac |
39233581 |
T |
|
| Q |
658 |
ataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccacca |
757 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
39233582 |
gtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactttcatgaagaccgcgtgcaagtccacca |
39233681 |
T |
|
| Q |
758 |
taagcacgagactttct |
774 |
Q |
| |
|
||||||||||||||||| |
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| T |
39233682 |
taagcacgagactttct |
39233698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 39232721 - 39232797
Alignment:
| Q |
325 |
ataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatg |
401 |
Q |
| |
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||||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
39232721 |
ataccttgacaaccacacaggagcaaccagttaccttcctagcttttccttctgaatcaattttgcacaactgcatg |
39232797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 564 - 807
Target Start/End: Complemental strand, 827084 - 826841
Alignment:
| Q |
564 |
cacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatc |
663 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |||||||||| | |||||||||||||| | || || || || || | ||| ||||| || |
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| T |
827084 |
cacttacaccagcccattctccaagtgtcttcgcactaggaactgtcagaagactaacattgtgctcagcacaaagagccttgacaagtttaacatagtc |
826985 |
T |
|
| Q |
664 |
aggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagca |
763 |
Q |
| |
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||| |||||||||||||| || ||||||||||||||| | | | ||||||||| ||||||||||||||||| || || ||||||||||||||||| || |
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| T |
826984 |
aggctggtcacaatcttctgcaagaacacaaagctgtcctgtgttcttctcaattacttttgcaccttcatggaggccacgtgcaagaccaccatatgcc |
826885 |
T |
|
| Q |
764 |
cgagactttctaagcaccagctgcagggcagtcatgatgtccat |
807 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||| |
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| T |
826884 |
aatgacttcctaagcacaagttgcaaggcagtcatgatgtccat |
826841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 27865038 - 27865093
Alignment:
| Q |
187 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcct |
242 |
Q |
| |
|
|||||| || || |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
27865038 |
agctttgacgtgctgcaaaacaacattgtaggcttcatgttcctccccaaaatcct |
27865093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 827508 - 827437
Alignment:
| Q |
325 |
ataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaact |
396 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| |||||||||||||| || || || |||||||| ||||||| |
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| T |
827508 |
ataccttgaccaccacacaggagcagccggttaccttcctagcttttccctcggagtcaatcttacacaact |
827437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 827646 - 827590
Alignment:
| Q |
187 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcctg |
243 |
Q |
| |
|
|||||| || || |||| ||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
827646 |
agctttcacgtgctgcagaacaacattgtaggcttcatgttcctccccaaagtcctg |
827590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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