View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_101 (Length: 288)

Name: NF8921_low_101
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_101
NF8921_low_101
[»] chr4 (1 HSPs)
chr4 (1-288)||(36547644-36547931)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 36547644 - 36547931
Alignment:
Q  1 gaagattacatcataagaatcttgtgggtttggtgggatatgcagcagaaagaggacgacacatgcttctttacatttatatgagcaacggtagtcttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36547644 gaagattacatcataagaatcttgtgggtttggtgggatatgcagcagaaagaggacgacacatgcttctttacatttatatgatcaacggtagtcttgc 36547743  T
Q  101 ttctcatttgtatggtaagaaaaagagcaattcttgtcctttaatatttgtagggagtattttgtgcggatatttgctcggtggtatacatgttctcact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36547744 ttctcatttgtatggtaagaaaaagagcaattcttgtcctttaatatttgtagggagtattttgtgcggatatttgctcggtggtatacatgttctcact 36547843  T
Q  201 attcaattgctcaataatagctaaaaaatttagcttgaactcttctggttatttgttttacttacctttgtgttgatgatccaggcga 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36547844 attcaattgctcaataatagctaaaaaatttagcttgaactcttctggttatttgttttacttacctttgtgttgatgatccaggcga 36547931  T

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