View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_103 (Length: 282)
Name: NF8921_low_103
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 456092 - 456358
Alignment:
| Q |
1 |
aaagaaggagagaatgataggtcatttatcccacctgaacactacactagaccttgagcacgacacaccacgacataggatctcgatgttctgttctaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
456092 |
aaagaaggagagaatgataggtcatttatcccacctaaacactacactagaccttgagcacgacacaccacgacataggatctcgatgttctgttctaga |
456191 |
T |
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| Q |
101 |
ataatataagacaaatgatggaaaaataaaattaagttcattgtaaaattacttgaatgatttcaacaagtcaatgtaatatcaaacatgcacctaggac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
456192 |
ataatataagacaaatgatggaaaaataaaattaagttcattgtaaaattacttgaatgatttcaacaagtcaatgtaatatcaaacgtgcacctagaac |
456291 |
T |
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| Q |
201 |
aaaatttgttcagagctaaaacgaataatgtttacgcaaaaaatagtttattacctgaagatgaagg |
267 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
456292 |
aaaatttgtccagagctaaaacgaataatgtttacgcaaaaaatagtttattacctgaagatgaagg |
456358 |
T |
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