View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_108 (Length: 261)

Name: NF8921_low_108
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_108
NF8921_low_108
[»] chr5 (6 HSPs)
chr5 (1-256)||(38965576-38965831)
chr5 (3-253)||(25761170-25761420)
chr5 (3-253)||(13850771-13851021)
chr5 (3-253)||(20236231-20236479)
chr5 (3-107)||(23352191-23352295)
chr5 (157-252)||(34833953-34834047)
[»] chr8 (5 HSPs)
chr8 (3-256)||(23710583-23710837)
chr8 (6-253)||(754008-754256)
chr8 (3-207)||(9710356-9710560)
chr8 (3-253)||(9173786-9174022)
chr8 (3-156)||(14822473-14822627)
[»] chr7 (3 HSPs)
chr7 (3-253)||(41257413-41257663)
chr7 (3-253)||(19215461-19215710)
chr7 (175-256)||(15889273-15889354)
[»] chr1 (4 HSPs)
chr1 (7-253)||(45910465-45910711)
chr1 (3-253)||(50515264-50515514)
chr1 (3-253)||(44713153-44713403)
chr1 (3-55)||(16768014-16768066)
[»] chr2 (4 HSPs)
chr2 (3-253)||(38619177-38619427)
chr2 (3-253)||(17312582-17312832)
chr2 (6-256)||(9635368-9635619)
chr2 (3-48)||(26262694-26262739)
[»] chr3 (3 HSPs)
chr3 (3-256)||(54586332-54586586)
chr3 (3-256)||(6162099-6162353)
chr3 (3-253)||(52972499-52972750)
[»] chr6 (2 HSPs)
chr6 (3-256)||(18459815-18460073)
chr6 (3-94)||(24133346-24133437)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 38965576 - 38965831
Alignment:
Q  1 gattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggt 100  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38965576 gattaacatcatcattttcgtctgaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatgat 38965675  T
Q  101 atgtactgactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  38965676 atgtactgactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatccggactacaccagtacagaaactgtgttcattttctg 38965775  T
Q  201 actatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38965776 actatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 38965831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 25761170 - 25761420
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||||| || ||| |||| |||||||||||||||||||| | |||||  |||||||||| ||||||||||||||| |||||||| |||    
T  25761170 ttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataaacctttccccattgattttttaggctattttcttttgatcacgtcatatgatat 25761269  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||| ||  |||||||  | | | ||| ||||  |||||||| ||| ||| ||||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  25761270 gtactgtacctttccggactatgcaatccagactggattcatgcgttccggagttcgaaatccggactgcaccagtacaaaaactgtgttcattttctga 25761369  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | |||||| |||||  |||||||||||||||||||||||||||||    
T  25761370 ctatgcct-gcactgttttcagatatggttgttccggttgatgccccaaatg 25761420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 13851021 - 13850771
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaacc-ttcctccattcgttttttaggcgattttcttttgatcatgtcatatggta 101  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||| |||||||| |     
T  13851021 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccccattcg-tttttaggcgatttccttttgatcacgtcatatgatt 13850923  T
Q  102 tgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctg 200  Q
    ||||||| ||  |||||||  | | | |||| |||  |||||||  ||| ||| |||| |||| ||||| ||| ||||||||||||||||||||||||||    
T  13850922 tgtactgtacctttccggactatgcaatccgcactggattcatggtttccggagttcgtaatccggactgcaccagtacagaaactgtgttcattttctg 13850823  T
Q  201 actatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    ||||||| | ||| || ||| |  |||||||||||| ||||||||||||||||    
T  13850822 actatgcat-gcattgtttttagatatggttgttccagttgatgccccaaatg 13850771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 20236479 - 20236231
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| | || |||||||||||||||||||||| | ||| |||||| ||||||||| |||||||||| |||||||| |||    
T  20236479 ttaacatcatcattttcgactgaatgctaaggtaatgtgtatataaaccttccccgatttgttttt-aggcgatttccttttgatcacgtcatatgatat 20236381  T
Q  103 gtactga-ctgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    ||| |   | | ||||||    ||| |||| |||  |||||||| ||| ||||||||||||| ||||| ||| |||||| ||| | ||||||||||||||    
T  20236380 gtaatcttcagatccggactttgaaatccgaactggattcatgcgttccggatttcgaaatccggactgcaccagtacataaattatgttcattttctga 20236281  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | |||||| |||||  ||| |||| ||||||||||||||||||||    
T  20236280 ctatgcct-gcactgttttcagatat-gttgctccggttgatgccccaaatg 20236231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 23352295 - 23352191
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||| | ||||||||||||||||| |||| |||||||||| |||||||| |||    
T  23352295 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcaatttccttttgatcacgtcatatgatat 23352196  T
Q  103 gtact 107  Q
    |||||    
T  23352195 gtact 23352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 34834047 - 34833953
Alignment:
Q  157 cgaaatctggactacactagtacagaaactgtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaat 252  Q
    |||||||  |||| ||| ||||||||||||||||||||||||||||||| | | |||||| |||||  ||||||||||||| ||||||||||||||    
T  34834047 cgaaatccagactgcaccagtacagaaactgtgttcattttctgactatacat-gcactgttttcagatatggttgttccgattgatgccccaaat 34833953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 23710837 - 23710583
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| |||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||    
T  23710837 ttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacgtcatatgatat 23710738  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||| |  ||||| ||| | ||| | |||||| ||||||||| ||| |||||||||| ||| |||| ||| |||||| ||||| ||||||||||||||    
T  23710737 gtactgtaacgttccagaatatgaaattcggactgcattcatgcgttccggatttcgaattctagactgcaccagtacataaactatgttcattttctga 23710638  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
    |||||| || ||||| ||| |  |||||||||| |||||||||||||||||||||    
T  23710637 ctatgcatgacactgtttttagatatggttgtttcggttgatgccccaaatgatg 23710583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 754008 - 754256
Alignment:
Q  6 acatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtatgta 105  Q
    ||||||||||||||| || ||| ||||  ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||| | ||||    
T  754008 acatcatcatttttgactgaatgcaaagataatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacttcatatgatctgta 754107  T
Q  106 ctg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctgacta 204  Q
    ||| || ||||| ||| | ||| |||||||| ||||||||| |||  ||||| ||||||  || | ||| || |||||||||||||||||||||| ||||    
T  754108 ctgtaccgttccagaatatgaaatccggactgcattcatgcgttccagattttgaaatccagagtgcaccagcacagaaactgtgttcattttctaacta 754207  T
Q  205 tgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    ||| || || || ||| |  |||||||||||||||||||||||||||||    
T  754208 tgcctgtcaatgtttttagatatggttgttccggttgatgccccaaatg 754256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 9710560 - 9710356
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| ||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||| |||    
T  9710560 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa-ccttcccccattcattttttaggcaattttcttttgatcatgtcatatgatat 9710462  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    | |||| ||| || ||||  ||| | ||||||||  |||||||| |||  || |||||||||  |||| ||| |||||||||||||||||||||||||||    
T  9710461 gcactgtactttttcggactacgcaatccggactggattcatgctttccagagttcgaaatccagactgcaccagtacagaaactgtgttcattttctga 9710362  T
Q  202 ctatgc 207  Q
    ||||||    
T  9710361 ctatgc 9710356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 9174022 - 9173786
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||||| || ||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| | |    
T  9174022 ttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggagattttcttttgatcacgtcatatgatct 9173923  T
Q  103 gtactgactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctgac 202  Q
    ||    ||| | ||||         ||||||||  |||||||| ||| ||||||| |||||  |||| ||| |||||||||||| |||||||||||||||    
T  9173922 gt----actctaccgg---------tccggactggattcatgcgttccggatttcaaaatccagactgcaccagtacagaaactatgttcattttctgac 9173836  T
Q  203 tatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    ||||| | |||||| |||||  |||||||| ||||||||||  ||||||||    
T  9173835 tatgcct-gcactgttttcagatatggttgctccggttgatatcccaaatg 9173786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 14822473 - 14822627
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||| |||||||  ||||| ||||||| ||||| ||||  ||||||| |      
T  14822473 ttaacatcatcatttttgtctaaatgtaaaggtaatgtgtatataaaccttcccccattcgaattttaagcgatttccttttaatcacatcatatgatcc 14822572  T
Q  103 gtact-gactgttccggaaaacgaattccggactacattcatgcattctggattt 156  Q
    ||||| ||   ||||||||||  || |||||||| |||||||||||| |||||||    
T  14822573 gtactggaacattccggaaaattaaatccggactgcattcatgcattttggattt 14822627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 41257663 - 41257413
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| |||    
T  41257663 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatatgatat 41257564  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||| ||  || ||||  | | | || ||| |  |||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||    
T  41257563 gtactgtaccttttcggactatgcaatctggattggattcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtttattttctga 41257464  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | |||||| |||||  ||||||||||||| |||||||||||||||    
T  41257463 ctatgcct-gcactgttttcagatatggttgttccgattgatgccccaaatg 41257413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 19215461 - 19215710
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||| | |    
T  19215461 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttcccccattagttttttaggcaattttcttttgatcacgtcatatgatct 19215560  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    ||| || ||  ||| |||  | | | ||||||||  |||||||| ||| ||| ||||||||||| ||| ||  ||||||||||||||| |||||||||||    
T  19215561 gtattgtacctttcaggactatgcaatccggactggattcatgcgttccggagttcgaaatctgaactgcatcagtacagaaactgtg-tcattttctga 19215659  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | |||||| |||||  | |||||||||||||||||||||||||||    
T  19215660 ctatgcct-gcactgttttcagatgtggttgttccggttgatgccccaaatg 19215710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 15889273 - 15889354
Alignment:
Q  175 agtacagaaactgtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  15889273 agtacagaaactatgttcattttctgactaagcttggcactgttttcagttatggttgttccggttgatgccccaaatgatg 15889354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 45910711 - 45910465
Alignment:
Q  7 catcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtatgtac 106  Q
    |||||||||||||| || ||| |||| ||||||| |||||||||||| | |||||| ||||||||| ||||| ||||||||||||||||||| | |||||    
T  45910711 catcatcatttttgactgaatgcaaaggtaatgtatatataaacctttccccattcattttttaggtgatttccttttgatcatgtcatatgatctgtac 45910612  T
Q  107 tg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctgactat 205  Q
    || ||  |||||||  | | | ||||||||  |||||||| ||||||| ||||||||  ||||| ||| |||||||||||||||||||||||||||||||    
T  45910611 tgtacctttccggactatgcaatccggactggattcatgcgttctggagttcgaaattcggactgcaccagtacagaaactgtgttcattttctgactat 45910512  T
Q  206 gcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    || | |||||| |||||  |||||||||||||||| ||||||||||||    
T  45910511 gcct-gcactgttttcagatatggttgttccggttaatgccccaaatg 45910465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 50515264 - 50515514
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||| | ||||| |||||||||||||||| |||||||||| |||||||| | |    
T  50515264 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccatttgttttttaggcgatttccttttgatcacgtcatatgatct 50515363  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||| ||  |||||||  | | | ||||||||  |||||||| ||| ||| ||||||||| ||||||||| |||||| |||||||||||||||| |||    
T  50515364 gtactgtacctttccggactatgcaatccggactggattcatgctttccggaattcgaaatccggactacaccagtacaaaaactgtgttcattttttga 50515463  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | |||||| |||||  ||||||||||||||||||| |||||||||    
T  50515464 ctatgcat-gcactgttttcatatatggttgttccggttgataccccaaatg 50515514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 44713403 - 44713153
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| |  | ||| |||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| | |    
T  44713403 ttaacatcatcattttcggttgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatatgatct 44713304  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||| ||  |||||||  | | | || |||||| |||||||||||| ||| || |||||  ||||| ||| |||||| ||||||||||||||||||||    
T  44713303 gtactgtacctttccggactatgcaatctggactagattcatgcattccggagttagaaattaggactgcaccagtacaaaaactgtgttcattttctga 44713204  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | ||| || |||||  |||||||||||||||||||||||||||||    
T  44713203 ctatgcct-gcattgttttcagatatggttgttccggttgatgccccaaatg 44713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16768066 - 16768014
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcc 55  Q
    |||||||||||||| | | || ||| |||| ||||||||||||||||||||||    
T  16768066 ttaacatcatcattctcgactgaatgcaaaggtaatgtgtatataaaccttcc 16768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 38619177 - 38619427
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||| | | ||| |||||||||||||||| |||||||||| |||||||| | |    
T  38619177 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccaatttgttttttaggcgatttccttttgatcacgtcatatgatct 38619276  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||| ||  |||||||  | | | ||||||||  |||||||| || ||||||||||||||| |||| ||| ||||||||||||||||||||||| |||    
T  38619277 gtactgtacctttccggactatgcaatccggactggattcatgcgttatggatttcgaaatctagactgcaccagtacagaaactgtgttcattttttga 38619376  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||| | | |||| |||||  ||||||||||||| |||||||| ||||||    
T  38619377 ctatgcct-gtactgttttcagatatggttgttccgattgatgcctcaaatg 38619427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 17312832 - 17312582
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||||||| | |    
T  17312832 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttctcccattcgttttttaggcgatttccttttgatcacgtcatatgattt 17312733  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    |||||  || | ||| ||    ||| |||| |||   |||| |  ||   |||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  17312732 gtactctaccggtccagactctgaaatccgaactgggttcacgtgtttcagatttcgaaatccggactgcaccagtacagaaactgtgttcattttctga 17312633  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    |||||||| |||||| |||||  ||||||||||| |||||||||||||||||    
T  17312632 ctatgctt-gcactgttttcagatatggttgttctggttgatgccccaaatg 17312582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 9635368 - 9635619
Alignment:
Q  6 acatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtatgta 105  Q
    |||||||||||||  ||| | | ||||  |||||||||||||||||||||   ||| |  ||||||||| ||| |||||||||| |||||||| | ||||    
T  9635368 acatcatcattttcatctgagtgcaaagataatgtgtatataaaccttcccttatttgaattttaggcgctttccttttgatcacgtcatatgatctgta 9635467  T
Q  106 ctg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctgacta 204  Q
    ||| |    | || ||||  || || ||||| ||||||||||||   |||||   |||| | || |||| |||||| |||||||| ||||||||||| |     
T  9635468 ctggagcaatacgaaaaataaaatctggactgcattcatgcatttcagattttttaatccgaacaacaccagtacaaaaactgtgctcattttctgagtc 9635567  T
Q  205 tgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
    ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||    
T  9635568 tgcttcgcactgttttcagttatggttgttcctgttgatgccccaaatgatg 9635619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 26262694 - 26262739
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataa 48  Q
    |||||| |||||||||||||| ||| |||| |||||||||||||||    
T  26262694 ttaacaacatcatttttgtctgaatgcaaaggtaatgtgtatataa 26262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 54586332 - 54586586
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| |||| ||| |||| ||| ||||||||||||  |||  ||||||||||||||||| |||| |||||||||| |||||| | | |    
T  54586332 ttaacatcatcattttcgtctgaatgcaaaggtagtgtgtatataaaatttctcccattcgttttttaggcaatttccttttgatcacgtcatacgatct 54586431  T
Q  103 gtactgactgt-tccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
    ||||||  | | |||| ||||  ||||| ||||| |||||||   ||  |||||| | |||| | || |||| |||||| ||| | ||||||||||||||    
T  54586432 gtactggatttatccgaaaaataaattcgggactgcattcatatgtttaggatttagtaatccgaacaacaccagtacaaaaattatgttcattttctga 54586531  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
    || ||||| ||| || ||||| |||||||||||||||||||||||||||||||||    
T  54586532 ctctgcttcgcattgttttcagttatggttgttccggttgatgccccaaatgatg 54586586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 6162353 - 6162099
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtat 102  Q
    |||||||||||||||| |||| ||| |||| |||||||||||||||||||| | | | ||| |||||||||||||  |||||||||| ||  |||| |||    
T  6162353 ttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctttccctagtcgatttttaggcgattaacttttgatcacgttgtatgatat 6162254  T
Q  103 gtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctga 201  Q
      | || ||||||||||||    || ||||| || ||||||||| |||||||||||| | || |||   ||| ||| |||||||||||||||||||||||    
T  6162253 tcattgtactgttccggaatgttaaatccggtctgcattcatgcgttctggatttcggattccggagagcaccagtgcagaaactgtgttcattttctga 6162154  T
Q  202 ctatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
    || | ||| |||||| ||||| | ||||||||||| |||||| ||| ||||||||    
T  6162153 ctctacttcgcactgttttcagtcatggttgttcctgttgatcccctaaatgatg 6162099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 52972750 - 52972499
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctcc-attcgttttttaggcgattttcttttgatcatgtcatatggta 101  Q
    |||||||||||||||| | || ||| |||| ||||||||| |||||||||||| || ||||||||||||||||||||  ||||||||| |||||||| |     
T  52972750 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtgtataaaccttccccccattcgttttttaggcgatttctttttgatcacgtcatatgatt 52972651  T
Q  102 tgtactg-ac-tgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttct 199  Q
    ||||||  || ||||| |||     || || |||||  |||||||| ||| |||||| |||||||||||| ||| | |||||||||||||||||||||||    
T  52972650 tgtactctacatgttc-ggactgtaaaatctggactggattcatgcgttccggattttgaaatctggactgcaccaatacagaaactgtgttcattttct 52972552  T
Q  200 gactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 253  Q
    ||||||| |  |||||| || ||  ||||||||||  |||||||||||||||||    
T  52972551 gactatg-tctgcactgtttacagatatggttgttttggttgatgccccaaatg 52972499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 18460073 - 18459815
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataa---accttcctccattcgtttttta-ggcgattttcttttgatcatgtcatatg 98  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||   ||||||| ||||| |||||||  |||||||| |||||||||| ||||||||    
T  18460073 ttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccatttgttttttttggcgatttccttttgatcacgtcatatg 18459974  T
Q  99 gtatgtactgact-gttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcatttt 197  Q
     | ||||||||   |||| ||||    || |||||||| ||||||||| ||| |||||| ||| |  |||    || ||| |||||||||||||||| ||    
T  18459973 atctgtactgaaacgttctggaatttcaaatccggactgcattcatgcgttccggattttgaatttcggatagaaccagtgcagaaactgtgttcatctt 18459874  T
Q  198 ctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 256  Q
     ||||| ||||| |||||| ||||| | ||||||||||| |||||||||||| ||||||    
T  18459873 ttgactctgcttcgcactgctttcagtcatggttgttcctgttgatgccccacatgatg 18459815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 24133437 - 24133346
Alignment:
Q  3 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtca 94  Q
    |||||||||||||||| | || |||||||| ||||||||||||||||||||||  |||||| ||| |||||| ||| |||||||||||||||    
T  24133437 ttaacatcatcattttcgactgaattcaaaggtaatgtgtatataaaccttccctcattcgatttctaggcgctttccttttgatcatgtca 24133346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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