View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_110 (Length: 257)
Name: NF8921_low_110
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 37926980 - 37926752
Alignment:
| Q |
11 |
acatcaacatcataaagggtagacaagtggagtcaaagatttgagaaaaagtgtacacaatgacactttgttggatgagacaagaattgaagaagatgat |
110 |
Q |
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| T |
37926980 |
acatcaacatcataaagggtagacaagtggagtcaaagatttgagaaaaagtgtacacaatgacactttgttggatgagacaagaattgaagaagaggat |
37926881 |
T |
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| Q |
111 |
aattatagtatttatcaaaatgaagatatttgactgctcaaattagtcagaatttgtagatgatatatatacacaagcataccaggacagggaaggtaaa |
210 |
Q |
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| T |
37926880 |
aattatagtatttatcaaaatgaagatatttgactgctcaaattagtcagaatttgtagatgata--tatacacaagcatgtgaggacaacgaaggtaaa |
37926783 |
T |
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| Q |
211 |
acttgtccctagaagataaacggccaaaaat |
241 |
Q |
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| T |
37926782 |
acttgtctctagaaggtaaacggccaaaaat |
37926752 |
T |
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