View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_112 (Length: 254)

Name: NF8921_low_112
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_112
NF8921_low_112
[»] chr2 (6 HSPs)
chr2 (1-247)||(24039240-24039486)
chr2 (1-247)||(31269573-31269818)
chr2 (1-61)||(24038231-24038291)
chr2 (4-62)||(31180185-31180243)
chr2 (49-120)||(36316443-36316515)
chr2 (110-161)||(36316534-36316585)
[»] chr5 (13 HSPs)
chr5 (1-247)||(21256402-21256648)
chr5 (49-216)||(43233647-43233814)
chr5 (110-247)||(41949585-41949722)
chr5 (110-247)||(17823304-17823442)
chr5 (49-118)||(35304832-35304901)
chr5 (1-61)||(21254116-21254176)
chr5 (1-61)||(26873271-26873331)
chr5 (50-124)||(41949496-41949570)
chr5 (1-103)||(17823477-17823581)
chr5 (165-229)||(15543955-15544019)
chr5 (1-61)||(31339249-31339309)
chr5 (1-109)||(15543763-15543872)
chr5 (114-149)||(35304912-35304947)
[»] chr7 (9 HSPs)
chr7 (1-247)||(41832387-41832634)
chr7 (51-247)||(34512603-34512805)
chr7 (110-241)||(7737068-7737199)
chr7 (1-61)||(41830168-41830228)
chr7 (43-124)||(7737214-7737295)
chr7 (4-61)||(8083502-8083559)
chr7 (30-101)||(23612241-23612312)
chr7 (167-247)||(219320-219398)
chr7 (110-179)||(23612138-23612208)
[»] chr8 (5 HSPs)
chr8 (1-247)||(7275254-7275501)
chr8 (49-247)||(26175198-26175400)
chr8 (1-61)||(7277859-7277919)
chr8 (1-60)||(13856639-13856698)
chr8 (1-39)||(3567601-3567639)
[»] scaffold0525 (1 HSPs)
scaffold0525 (1-247)||(2138-2385)
[»] scaffold0862 (1 HSPs)
scaffold0862 (1-211)||(39-250)
[»] chr4 (7 HSPs)
chr4 (110-247)||(5444473-5444610)
chr4 (110-248)||(11814897-11815034)
chr4 (49-126)||(5444623-5444700)
chr4 (1-63)||(2546986-2547048)
chr4 (48-103)||(11815067-11815122)
chr4 (58-102)||(14781257-14781301)
chr4 (1-61)||(20880149-20880209)
[»] chr3 (7 HSPs)
chr3 (49-247)||(4607218-4607417)
chr3 (1-103)||(8504313-8504417)
chr3 (49-124)||(42656345-42656420)
chr3 (1-61)||(10018888-10018948)
chr3 (1-61)||(10256202-10256262)
chr3 (1-61)||(10180085-10180145)
chr3 (124-247)||(10745376-10745500)
[»] scaffold0001 (1 HSPs)
scaffold0001 (51-247)||(144802-145002)
[»] chr6 (5 HSPs)
chr6 (51-247)||(6823176-6823376)
chr6 (49-124)||(14618884-14618959)
chr6 (1-61)||(30689744-30689804)
chr6 (49-84)||(29427297-29427332)
chr6 (8-45)||(31792317-31792354)
[»] scaffold0263 (2 HSPs)
scaffold0263 (110-247)||(22679-22810)
scaffold0263 (49-124)||(22825-22900)
[»] chr1 (6 HSPs)
chr1 (114-247)||(9906043-9906174)
chr1 (43-124)||(9905943-9906024)
chr1 (1-61)||(18705818-18705878)
chr1 (167-247)||(35267763-35267843)
chr1 (210-247)||(18703389-18703426)
chr1 (8-61)||(12436186-12436239)
[»] scaffold0655 (2 HSPs)
scaffold0655 (1-103)||(570-672)
scaffold0655 (110-161)||(486-537)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-61)||(111654-111714)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-61)||(4583-4643)
[»] scaffold1412 (1 HSPs)
scaffold1412 (168-247)||(25-104)
[»] scaffold0005 (1 HSPs)
scaffold0005 (58-102)||(58429-58473)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 24039486 - 24039240
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24039486 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaac 24039387  T
Q  101 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 200  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24039386 ttgaaatgagaaaatacaaggaaagatgctagaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 24039287  T
Q  201 tgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24039286 tgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 24039240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 31269573 - 31269818
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31269573 tacaagttatttatattactctctactaggactaatatgctacta-tctatatatctaatagtccccctcaagttggaaggtgttcaaaacacttccaac 31269671  T
Q  101 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 200  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31269672 ttgaaatgagaaaatacaaggaaagatgctagaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 31269771  T
Q  201 tgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  31269772 tgtaaccacttggaggaagaagcaacagaccaacgcttaaccaccat 31269818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24038291 - 24038231
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038291 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 24038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 31180243 - 31180185
Alignment:
Q  4 aagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180243 aagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 31180185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 36316443 - 36316515
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttc-aaaacactttcaacttgaaatgagaaaatacaag 120  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  36316443 tatatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaataagaaaatacaag 36316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 36316534 - 36316585
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaa 161  Q
    |||||||||||||||||||| ||||||||| |||||||||  ||||||||||    
T  36316534 gaaaatacaaggaaagatgctggaaatacactggccaagagaatagcaacaa 36316585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 21256648 - 21256402
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  21256648 tacaagttatttatactactctctactatgactaatatgctactaatctatatctctaatagtccctctcaagttggaaggtgttcaaaacacttccaac 21256549  T
Q  101 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 200  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21256548 ttgaaatgagaaaatacaaggaaagatgctagaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 21256449  T
Q  201 tgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21256448 tgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 21256402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 216
Target Start/End: Complemental strand, 43233814 - 43233647
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaag 148  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||| |||||||||||| | |||||    
T  43233814 tataactctaatagtcccccgcaagttggaaggcgttcaaaacacttccaacttgggatgagaaaatacaaggaaagataccggaaatacatcgaccaag 43233715  T
Q  149 aacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 216  Q
    |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43233714 agaatagcaacaaccaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 43233647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 41949585 - 41949722
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccac 209  Q
    |||||||||||||||||||||||||||| || ||||||||  | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  41949585 gaaaatacaaggaaagatgccggaaatatatcggccaagagaagagcagcaaccaaatgcttatccaacaagaggaaaccacaactcaatgtgtaaccac 41949684  T
Q  210 ttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  41949685 ttggaggaagaagcaacaaaccaacacttaaccaccat 41949722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 17823442 - 17823304
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 208  Q
    |||||||||| || |||||| |||||||||| ||| || | ||||| |||||| ||||||||||| |||||||| ||||||| || ||||||| ||||||    
T  17823442 gaaaatacaatgagagatgctggaaatacatcggctaaaagcatagtcaacaagcaaatgcttattcaacaagaagaaaccataattcaaggtttaacca 17823343  T
Q  209 cttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||||||||| |||| ||||| ||||||    
T  17823342 cttggaggaagaagcaacaaatcaacccttaatcaccat 17823304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 35304832 - 35304901
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaataca 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35304832 tatatctcaaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaataca 35304901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21254176 - 21254116
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21254176 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 21254116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26873271 - 26873331
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26873271 tacaagttatttttactactctctactaggactaatatgctactaatctatatctctaata 26873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 41949496 - 41949570
Alignment:
Q  50 atatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaa 124  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||    
T  41949496 atatatctaatagtccccctcaagttggaaggtgctcaaaacacttccacattgaaatgagaaaatacaaggaaa 41949570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17823581 - 17823477
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctct--aatagtccccctcaagttggaaggtgttcaaaacactttca 98  Q
    |||||||||||||||||| | | ||||| ||||||| | | | |||||||||| | |  ||||||||||  |||||||||||||||||| ||||||||||    
T  17823581 tacaagttatttatactaatatttactatgactaatgtaccattaatctatatatatccaatagtcccctgcaagttggaaggtgttcataacactttca 17823482  T
Q  99 acttg 103  Q
    |||||    
T  17823481 acttg 17823477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 15543955 - 15544019
Alignment:
Q  165 aatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaa 229  Q
    |||||||||||||||| | |||||||||||| ||||| || || |||||||||||||||||||||    
T  15543955 aatgcttatccaacaaaaagaaaccacaacttaaggtttacccgcttggaggaagaagcaacaaa 15544019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31339249 - 31339309
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||||||||||||||||||||||||||||||||||||  || || || ||||||||||||    
T  31339249 tacaagttatttatactactctctactaggactaatataatattattcaatatctctaata 31339309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15543763 - 15543872
Alignment:
Q  1 tacaagttatttatactactct-ctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaa 99  Q
    |||||| |||||||||||||   ||| |||||||||||||| |||| | ||||| || |||||| |||  |||||||||||||||||| | ||||| |||    
T  15543763 tacaagctatttatactacttaactattaggactaatatgccactagtttatatttccaatagtgcccagcaagttggaaggtgttcacagcacttccaa 15543862  T
Q  100 cttgaaatga 109  Q
    ||||| ||||    
T  15543863 cttgagatga 15543872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 35304912 - 35304947
Alignment:
Q  114 atacaaggaaagatgccggaaatacattggccaaga 149  Q
    ||||||||||||||||||||||||||| ||||||||    
T  35304912 atacaaggaaagatgccggaaatacatcggccaaga 35304947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 41832634 - 41832387
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41832634 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccttcaagttggaaggtgttcaaaacacttccaac 41832535  T
Q  101 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaa-g 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  41832534 ttgaaatgagaaaatacaaggaaagatgccagaaatacattggccaagaacataacaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 41832435  T
Q  200 gtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41832434 gtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 41832387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 34512805 - 34512603
Alignment:
Q  51 tatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaagatgccggaaatacattggc-----c 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||          
T  34512805 tatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaagatgccggaaacacatcggctaaaaa 34512706  T
Q  146 aagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccac 244  Q
    || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  ||||| ||| | |||| |||| |||| ||||||||||||||    
T  34512705 aaaaacatagtcatcaagcaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaatgaaggagcatcaaagcaacgcttaaccac 34512606  T
Q  245 cat 247  Q
    |||    
T  34512605 cat 34512603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 7737199 - 7737068
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccac 209  Q
    |||||||||| |||||||||||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  7737199 gaaaatacaaagaaagatgccggaaatacatcgaccaagagcatagaaacaaccaaatgcttattcaacaagaggaaaccacaactcaaggtttaaccac 7737100  T
Q  210 ttggaggaagaagcaacaaaccaacgcttaac 241  Q
    |||||||||||||||||||| |||||||||||    
T  7737099 ttggaggaagaagcaacaaaacaacgcttaac 7737068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41830228 - 41830168
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830228 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 41830168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 7737295 - 7737214
Alignment:
Q  43 ctaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaa 124  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||    
T  7737295 ctaacctatatctctaatagtcccccgcaagttggaaggtgttcaaaccacttccaacttgggatgagaaaatacaaggaaa 7737214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 8083502 - 8083559
Alignment:
Q  4 aagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8083502 aagttatttatactactctttactaggactaatatgctactaatctatatctttaata 8083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 23612312 - 23612241
Alignment:
Q  30 gactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaact 101  Q
    ||||||||||  ||||| ||||||||||||||||||| | |||||||||||||||||| ||||||| |||||    
T  23612312 gactaatatgaaactaaactatatctctaatagtccctcgcaagttggaaggtgttcacaacacttccaact 23612241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 219320 - 219398
Alignment:
Q  167 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||||||||||||||| |||| ||||||||||||| ||||| ||| || ||| || ||||||| ||||| |||||||||||    
T  219320 tgcttatccaacaagaagaaa-cacaactcaaggtttaaccgctt-gaagaaaaaacaacaaatcaacgtttaaccaccat 219398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 23612208 - 23612138
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatag-caacaatcaaatgcttatccaaca 179  Q
    ||||| ||||||| | ||||||||||||||| | |||| ||||||| |||||| ||||| |||||||||||    
T  23612208 gaaaacacaaggagaaatgccggaaatacatcgaccaaaaacatagtcaacaaccaaatacttatccaaca 23612138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 7275254 - 7275501
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7275254 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaac 7275353  T
Q  101 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaagg 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7275354 ttgaaatgagaaaatacaaggaaagatgccagaaatacattggccaagaacatagcaacaatcaaaggcttatccaacaagaggaaaccacaactcaagg 7275453  T
Q  201 tgtaacca-cttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||    
T  7275454 tgtaatcaccttggaggaagaagcagcaaaccaacgcttaaccaccat 7275501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 26175400 - 26175198
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaagatgccggaaatacattggc---c 145  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| || |||| |||        
T  26175400 tatatctctaatagtccccctcaagttggaaggtgttcaaaacatttccaacttgaaatgagaaaatacaaggaaagatgccgggaacacatcggctaaa 26175301  T
Q  146 aagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccac 244  Q
    || || |||| || ||| ||| |||||||||||||||| | ||||| |||||||| |  ||||| ||| ||||||||||| |||| ||||||||||||||    
T  26175300 aaaaaaatagtcatcaaacaagtgcttatccaacaagaagcaaccaaaactcaagattgaaccaattgaaggaagaagcatcaaagcaacgcttaaccac 26175201  T
Q  245 cat 247  Q
    |||    
T  26175200 cat 26175198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7277859 - 7277919
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7277859 tacaagttatttatactactctctactaggactaatatgctaataatctatatctctaata 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13856698 - 13856639
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaat 60  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13856698 tacaagttatttatactactctctactaggactaatatgccactaatctatatctctaat 13856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3567601 - 3567639
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatg 39  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  3567601 tacaggttatttatactactctctgctaggactaatatg 3567639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 2138 - 2385
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaa-cactttcaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  2138 tacaagttatttatactactctctactaggactaatatgctattaatctatatctctaatagtccccctcaagttagaaggtgttcaaaaacacttccaa 2237  T
Q  100 cttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaag 199  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2238 cttgaaatgagaaagtacaaggaaagatgttggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaag 2337  T
Q  200 gtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  2338 gtgtaatcacttggaggaagaagcaacaaaccaacgcttaaccaccat 2385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 250 - 39
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  250 tacaagttatttatactattctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttgaaaggtgttcaaaacacttccaac 151  T
Q  101 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgctta-tccaacaagaggaaaccacaactcaag 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  150 ttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttactccaacaagagaaaaccacaactcaag 51  T
Q  200 gtgtaaccactt 211  Q
    ||||||||||||    
T  50 gtgtaaccactt 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 5444610 - 5444473
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccac 209  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||     
T  5444610 gaaaatacaagtaaagatgccggaaatacatcggccaagagcatagcaacaaccaaatgcttatccaacaagaggaaaccacaactcaaggtggaatcat 5444511  T
Q  210 ttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5444510 ttggaggaagaagcaacaaagcaacgcttaaccaccat 5444473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 110 - 248
Target Start/End: Complemental strand, 11815034 - 11814897
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccac 209  Q
    ||||||||||| | ||||||||||| |  || |||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |    
T  11815034 gaaaatacaagtagagatgccggaagtttatcggccaagagcatagcaacaaccaaatgcttatccaaccagaggaaaccacaactcaaggtttaaccgc 11814935  T
Q  210 ttggaggaagaagcaacaaaccaacgcttaaccaccata 248  Q
    || || |||||||||||||| ||||||||||||||||||    
T  11814934 tt-gatgaagaagcaacaaaacaacgcttaaccaccata 11814897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 5444700 - 5444623
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaaga 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5444700 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaaga 5444623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2547048 - 2546986
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547048 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagt 2546986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 11815122 - 11815067
Alignment:
Q  48 ctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttg 103  Q
    ||||||||||||||||| ||| |||||||||||||||| | ||||||| |||||||    
T  11815122 ctatatctctaatagtctcccgcaagttggaaggtgtttacaacacttccaacttg 11815067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 14781257 - 14781301
Alignment:
Q  58 aatagtccccctcaagttggaaggtgttcaaaacactttcaactt 102  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||    
T  14781257 aataatccccatcaagttggaagatgttcaaaacactttcaactt 14781301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20880149 - 20880209
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||| |||||||| ||||||    || ||||||| ||||||||||    
T  20880149 tacaagttatttatactactgtctactagaactaatgaattattaatctacatctctaata 20880209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 4607417 - 4607218
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaag 148  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||| ||| ||     
T  4607417 tatatctcaaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaagatgtcgggaacacatcggctaaa 4607318  T
Q  149 aacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||| || || ||| ||| |||||||||||||||| | ||||||||||||||||  ||||| ||  |||| |||||| |||| |||||||||| ||||||    
T  4607317 aacaaagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaatttcaggatgaagcatcaaagcaacgcttaaacaccat 4607218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8504313 - 8504417
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctata--tctctaatagtccccctcaagttggaaggtgttcaaaacactttca 98  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||    
T  8504313 tacaagttatttatactactctttactaggactaatatgccactaatctatatatctctaatagtcccccgcaagttggaaggtgttcacaacactttca 8504412  T
Q  99 acttg 103  Q
    |||||    
T  8504413 acttg 8504417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 42656345 - 42656420
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  42656345 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacacggaaa 42656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10018888 - 10018948
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  10018888 tacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10256202 - 10256262
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  10256202 tacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10256262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10180085 - 10180145
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||||||||||||| ||||||||||||  |||||||||| ||||||||||||||||||||    
T  10180085 tacaagttatttatattactctctactacaactaatatgccactaatctatatctctaata 10180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 10745500 - 10745376
Alignment:
Q  124 agatgccggaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaag 222  Q
    ||||| |||||| |||| | |||||| ||||| ||| || ||||||  |||||||||||||||||| |||||||||||| ||||   ||||  | | |||    
T  10745500 agatgtcggaaacacatcgtccaagagcatagtcaataaccaaatgtgtatccaacaagaggaaactacaactcaaggtttaactgtttgggagtataag 10745401  T
Q  223 caacaaaccaacgcttaaccaccat 247  Q
    ||| ||| |||||||||||||||||    
T  10745400 caataaaacaacgcttaaccaccat 10745376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 144802 - 145002
Alignment:
Q  51 tatctctaatagtccccctcaagttggaaggtgttcaaaa-cactttcaacttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaaga 149  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| || |    
T  144802 tatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaatgagaaaatacaaggaaagatgccggaaacacatcggctaaaa 144901  T
Q  150 acata---gcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccacca 246  Q
    | |||    || ||| |||  ||||||||||||||| | ||||||||||||||||  ||||| ||| |||||| |||| |||| ||||||||||||||||    
T  144902 aaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacca 145001  T
Q  247 t 247  Q
    |    
T  145002 t 145002  T

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Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 6823176 - 6823376
Alignment:
Q  51 tatctctaatagtccccctcaagttggaaggtgttcaaaa-cactttcaacttgaaatgagaaaatacaaggaaagatgccggaaatacattggccaaga 149  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| || |    
T  6823176 tatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaatgagaaaatacaaggaaagatgccggaaacacatcggctaaaa 6823275  T
Q  150 acata---gcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccacca 246  Q
    | |||    || ||| |||  ||||||||||||||| | ||||||||||||||||  ||||| ||| |||||| |||| |||| ||||||||||||||||    
T  6823276 aaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacca 6823375  T
Q  247 t 247  Q
    |    
T  6823376 t 6823376  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 14618884 - 14618959
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  14618884 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacatgaaatgagaaaatacagggaaa 14618959  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30689744 - 30689804
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30689744 tacaaattatttatactactctctactaggactaatatgctactaatctatatctctaata 30689804  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 29427332 - 29427297
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgt 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  29427332 tatatctctaatagtccccctcaagttggaaggtgt 29427297  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 31792354 - 31792317
Alignment:
Q  8 tatttatactactctctactaggactaatatgctacta 45  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  31792354 tatttatactactatctactaggactaatacgctacta 31792317  T

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Target: scaffold0263 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 22810 - 22679
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccac 209  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||       |||||    
T  22810 gaaaatacaaggtaagatgccggaaatacatcggccaagagcatagcaacaaccaaatgcttatccaacaagaggaaaccacaactca------gaccac 22717  T
Q  210 ttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22716 ttggaggaagaagcaacaaaccaacgcttaaccaccat 22679  T

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Target: scaffold0263; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 22900 - 22825
Alignment:
Q  49 tatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaa 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  22900 tatatctctaatagtccccctcatgttggaaggtgttcaaaacacttccaatttgaaatgagaaaatacaaggaaa 22825  T

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Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 9906043 - 9906174
Alignment:
Q  114 atacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttgg 213  Q
    |||||| |||||||| ||| ||||||| ||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  9906043 atacaatgaaagatgtcgggaatacatcggccaagagaatagcaacaaccaaatgcctatccaacaagaggaaaccacaactcaaggtgtaatcacttgg 9906142  T
Q  214 aggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||  ||||||||||||||||||||||||||||||    
T  9906143 ag--agaagcaacaaaccaacgcttaaccaccat 9906174  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 9905943 - 9906024
Alignment:
Q  43 ctaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaa 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9905943 ctaaactatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaa 9906024  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18705818 - 18705878
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18705818 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 18705878  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 35267763 - 35267843
Alignment:
Q  167 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||| |||| |||||| |||| |||||||||||||||||    
T  35267763 tgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttgaaggatgaagcatcaaagcaacgcttaaccaccat 35267843  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 18703389 - 18703426
Alignment:
Q  210 ttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18703389 ttggaggaagaagcaacaaaccaacgcttaaccaccat 18703426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 12436239 - 12436186
Alignment:
Q  8 tatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||    
T  12436239 tatttatactactatttactagaactaatatgccactaatctatatctccaata 12436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 672 - 570
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaac 100  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  672 tacaagttatttatactactctctactaggattaatatggcactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaac 573  T
Q  101 ttg 103  Q
    |||    
T  572 ttg 570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 537 - 486
Alignment:
Q  110 gaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaa 161  Q
    ||||||||||||| ||||||||||||||||| ||||||||  ||||||||||    
T  537 gaaaatacaaggagagatgccggaaatacatcggccaagagaatagcaacaa 486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 111654 - 111714
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111654 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 111714  T

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Target: scaffold0251 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4643 - 4583
Alignment:
Q  1 tacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4643 tacaaattatttatactactctctactaggactaatatgctactaatctatatatctaata 4583  T

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Target: scaffold1412 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 25 - 104
Alignment:
Q  168 gcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccat 247  Q
    ||||||||||||||| | ||||||||||||||||  ||||| ||| |||||| |||| |||| |||||||||||||||||    
T  25 gcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccaccat 104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 58473 - 58429
Alignment:
Q  58 aatagtccccctcaagttggaaggtgttcaaaacactttcaactt 102  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||    
T  58473 aataatccccatcaagttggaagatgttcaaaacactttcaactt 58429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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