View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_115 (Length: 252)
Name: NF8921_low_115
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_115 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 18033208 - 18032986
Alignment:
| Q |
15 |
ctctgaaaaacaacaacattaaccagccatcccatttaaaccatccataatcaaaaggaaactgacatgcggataaaagcgaccgatagcggcttgtatg |
114 |
Q |
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| T |
18033208 |
ctctgcaaaacaacaacattaatcagccattccatttaaaccatctattgtcaaaatgaaactgacatgcggataaaagcgaccgatagcggcttgtatg |
18033109 |
T |
|
| Q |
115 |
accgcctataagaaccaacgcatccatatcccaagacctagattttaaattaaacaaaccgacggcactaaaaggagacatcgctagtgtgtacaaacct |
214 |
Q |
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| T |
18033108 |
accgcctataagaaccaacacatccatat-ccaagacctagattttaaattaaacaaaccgacggcgctaaaaggagacatcgctagtgtgttcaaacct |
18033010 |
T |
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| Q |
215 |
tgtgagtgacgaaagagcaacacc |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
18033009 |
tgtgagtgacgaaagagcaacacc |
18032986 |
T |
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