View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_119 (Length: 246)

Name: NF8921_low_119
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_119
NF8921_low_119
[»] scaffold0259 (1 HSPs)
scaffold0259 (17-229)||(494-706)
[»] scaffold0197 (1 HSPs)
scaffold0197 (17-232)||(17415-17630)
[»] chr8 (14 HSPs)
chr8 (17-232)||(10687370-10687585)
chr8 (17-232)||(35742155-35742370)
chr8 (17-228)||(26298148-26298359)
chr8 (17-228)||(26311405-26311616)
chr8 (17-232)||(33036039-33036254)
chr8 (17-232)||(18868776-18868991)
chr8 (17-229)||(26401459-26401671)
chr8 (24-229)||(4814058-4814263)
chr8 (24-229)||(28331039-28331244)
chr8 (24-229)||(25683051-25683256)
chr8 (42-205)||(28893932-28894095)
chr8 (24-229)||(16754092-16754297)
chr8 (118-226)||(40827427-40827535)
chr8 (129-193)||(15947842-15947906)
[»] chr7 (14 HSPs)
chr7 (17-232)||(16881693-16881908)
chr7 (17-232)||(21641456-21641671)
chr7 (17-232)||(24264429-24264644)
chr7 (17-232)||(18410423-18410638)
chr7 (17-214)||(21985685-21985882)
chr7 (17-229)||(24273013-24273226)
chr7 (17-231)||(9188252-9188466)
chr7 (108-232)||(12404827-12404951)
chr7 (17-114)||(12398521-12398618)
chr7 (24-229)||(7073195-7073400)
chr7 (24-205)||(25408582-25408763)
chr7 (24-205)||(25403825-25404006)
chr7 (24-229)||(3321620-3321825)
chr7 (159-214)||(5071564-5071619)
[»] chr5 (12 HSPs)
chr5 (17-232)||(31400098-31400313)
chr5 (17-232)||(33769805-33770020)
chr5 (17-232)||(28805828-28806043)
chr5 (17-229)||(37559702-37559914)
chr5 (17-232)||(27446589-27446804)
chr5 (17-232)||(43593887-43594102)
chr5 (17-232)||(43626681-43626896)
chr5 (17-232)||(28833825-28834040)
chr5 (77-229)||(24558693-24558845)
chr5 (77-229)||(24599725-24599877)
chr5 (42-229)||(25450901-25451088)
chr5 (143-228)||(31301224-31301309)
[»] chr4 (9 HSPs)
chr4 (17-232)||(18857342-18857557)
chr4 (17-232)||(3791239-3791454)
chr4 (17-230)||(16627100-16627313)
chr4 (17-232)||(5144676-5144891)
chr4 (17-128)||(9227542-9227653)
chr4 (24-205)||(15315485-15315666)
chr4 (24-205)||(4568511-4568692)
chr4 (49-193)||(16637341-16637485)
chr4 (187-229)||(9227510-9227552)
[»] chr3 (17 HSPs)
chr3 (17-229)||(32477106-32477318)
chr3 (17-229)||(8513860-8514072)
chr3 (17-232)||(2675326-2675541)
chr3 (17-232)||(22171414-22171629)
chr3 (17-229)||(1307637-1307849)
chr3 (17-229)||(16256835-16257047)
chr3 (24-205)||(10609605-10609786)
chr3 (24-205)||(10900177-10900358)
chr3 (24-229)||(22622957-22623162)
chr3 (24-229)||(54191652-54191857)
chr3 (125-229)||(3326635-3326739)
chr3 (24-229)||(10095638-10095843)
chr3 (24-229)||(10202524-10202729)
chr3 (24-205)||(16460632-16460813)
chr3 (24-229)||(47879721-47879926)
chr3 (17-92)||(3326735-3326810)
chr3 (42-111)||(9149586-9149655)
[»] chr6 (9 HSPs)
chr6 (17-232)||(33334182-33334397)
chr6 (17-232)||(14740678-14740892)
chr6 (17-194)||(24714559-24714730)
chr6 (24-229)||(35202895-35203100)
chr6 (48-229)||(13881883-13882064)
chr6 (129-205)||(17691789-17691865)
chr6 (136-205)||(22347917-22347986)
chr6 (135-229)||(25944813-25944907)
chr6 (24-113)||(22345832-22345921)
[»] chr2 (10 HSPs)
chr2 (17-232)||(19346044-19346259)
chr2 (17-230)||(31057725-31057937)
chr2 (17-229)||(39486320-39486532)
chr2 (18-232)||(39484524-39484738)
chr2 (24-205)||(39685415-39685596)
chr2 (41-230)||(31134692-31134880)
chr2 (24-190)||(17942004-17942170)
chr2 (24-205)||(22714066-22714247)
chr2 (24-189)||(2739389-2739554)
chr2 (24-205)||(20051594-20051774)
[»] chr1 (9 HSPs)
chr1 (17-230)||(47101115-47101328)
chr1 (17-229)||(47702146-47702357)
chr1 (102-232)||(41395102-41395232)
chr1 (17-106)||(41392218-41392307)
chr1 (42-205)||(2396105-2396268)
chr1 (24-229)||(9524872-9525077)
chr1 (18-208)||(34689683-34689874)
chr1 (18-208)||(34694211-34694402)
chr1 (78-199)||(7155209-7155329)
[»] scaffold0078 (1 HSPs)
scaffold0078 (17-229)||(33806-34017)
[»] scaffold1764 (1 HSPs)
scaffold1764 (24-89)||(3-68)


Alignment Details
Target: scaffold0259 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 706 - 494
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  706 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 607  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  606 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtctt 507  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  506 ccacaaaaccttc 494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 17630 - 17415
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17630 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 17531  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  17530 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 17431  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  17430 ccacaaaaccttccgg 17415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 10687585 - 10687370
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10687585 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 10687486  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  10687485 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 10687386  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  10687385 ccacaaaaccttccgg 10687370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 35742155 - 35742370
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742155 catcaagatatcatccacatatagaagaagatagagaataactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 35742254  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  35742255 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 35742354  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  35742355 ccacaaaaccttccgg 35742370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 26298148 - 26298359
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26298148 catcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 26298247  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||     
T  26298248 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 26298347  T
Q  217 ccacaaaacctt 228  Q
    ||||||||||||    
T  26298348 ccacaaaacctt 26298359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 26311405 - 26311616
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26311405 catcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 26311504  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||     
T  26311505 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 26311604  T
Q  217 ccacaaaacctt 228  Q
    ||||||||||||    
T  26311605 ccacaaaacctt 26311616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 33036254 - 33036039
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33036254 catcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 33036155  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||     
T  33036154 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttggacttgtcct 33036055  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  33036054 ccacaaaaccttccgg 33036039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 18868991 - 18868776
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  18868991 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccccttctcacaaaaccg 18868892  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||     
T  18868891 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacctatacaaagatttcttcaaaagacacaccttggacttgtcct 18868792  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||| ||||||||||    
T  18868791 ccacagaaccttccgg 18868776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 26401671 - 26401459
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||  | |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  26401671 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatatacacgcaagaatcatatccgcttctcacaaaactg 26401572  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||     
T  26401571 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaactcatacaaagatttcttcaaaagacataccttagacttgtcct 26401472  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  26401471 ccacaaaaccttc 26401459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 4814058 - 4814263
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  4814058 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 4814157  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  4814158 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 4814257  T
Q  224 accttc 229  Q
    ||||||    
T  4814258 accttc 4814263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 28331244 - 28331039
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  28331244 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 28331145  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  28331144 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 28331045  T
Q  224 accttc 229  Q
    ||||||    
T  28331044 accttc 28331039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 25683256 - 25683051
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  25683256 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25683157  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  25683156 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 25683057  T
Q  224 accttc 229  Q
    ||||||    
T  25683056 accttc 25683051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 28894095 - 28893932
Alignment:
Q  42 agaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaacc 141  Q
    ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | |||    || ||||| |||||||    
T  28894095 agaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttttctaggaactcatcaaacc 28893996  T
Q  142 gacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
    |||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  28893995 gacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 28893932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 16754092 - 16754297
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |  ||| |||||| ||||||   |||||   ||||||||||||||  | ||| |    
T  16754092 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 16754191  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  16754192 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 16754291  T
Q  224 accttc 229  Q
    ||||||    
T  16754292 accttc 16754297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 40827535 - 40827427
Alignment:
Q  118 tcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccc 217  Q
    ||||||||| |||||| ||||||  || |||||||| |||||||||||||||||||| ||| |||||| ||||||||| |  ||  |||||||||||| |    
T  40827535 tcttcaaaataaactcatcaaactaacaataccatttcctagggctttgcttcaacctatagaaagatatcttcaaaatatgcaacttagacttgtcctc 40827436  T
Q  218 cacaaaacc 226  Q
    |||||||||    
T  40827435 cacaaaacc 40827427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 15947906 - 15947842
Alignment:
Q  129 aactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 193  Q
    ||||| ||||||||| || |||| ||||| || ||||||||||||| ||| ||||||||||||||    
T  15947906 aactcatcaaaccgaagaaaccactgccttggactttgcttcaacctatagaaagatttcttcaa 15947842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 16881693 - 16881908
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  16881693 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatacccgcttctcacaaaaccg 16881792  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  16881793 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 16881892  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  16881893 ccacaaaaccttccgg 16881908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 21641456 - 21641671
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21641456 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 21641555  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  21641556 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 21641655  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  21641656 ccacaaaaccttccgg 21641671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 24264644 - 24264429
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24264644 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 24264545  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  24264544 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 24264445  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  24264444 ccacaaaaccttccgg 24264429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 18410423 - 18410638
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  18410423 catcaagatatcatccacatataaaagaaggtagagaatgactttctcattcttctttaacatgtacacacaagaatcatatccgcttctcacaaagccg 18410522  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||      
T  18410523 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcgt 18410622  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  18410623 ccacaaaaccttccgg 18410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 21985685 - 21985882
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||| |||||||||||||||| |    
T  21985685 catcaagatatcatccacatataaaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaatcatacccgcttctcacaaaaccg 21985784  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtc 214  Q
    |||||||||||||| || | |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||| || |||||||||||    
T  21985785 gtcttcaaaagaaattcatgaaaccgacgatagcattgcctagggctttgcttcaaccgatacaaagatttctttaaaaaacataccttagacttgtc 21985882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 24273226 - 24273013
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaa-tgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaact 115  Q
    ||||||||||||||| ||||||||||||||||| | || ||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||     
T  24273226 catcaagatatcatcaacatataaaagaagataaaaaaatgaatttctcattcctcttcaacatgtacacacaataatcatatccgcttctcataaaacc 24273127  T
Q  116 ggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcc 215  Q
    ||||||||||||||| || |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||| | || ||||||||||||    
T  24273126 ggtcttcaaaagaaattcatcaaaccgacgataccattgcctaagactttacttcaacccatacaaagatttcttcaatagatataccttagacttgtcc 24273027  T
Q  216 cccacaaaaccttc 229  Q
     |||||||| ||||    
T  24273026 tccacaaaatcttc 24273013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 9188466 - 9188252
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||| |||||||||||||| |||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |    
T  9188466 catcaagatatcatcaacatataaaagaaggtagaaaataactttctcactcctcttcaacatgtacacacaagaatcatatctgcttctcacaaaaccg 9188367  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
     ||||||||||||| || ||||||  || |||| |||||||| | ||||| ||||| ||||||||||||||||| |||||||| || ||||||||||||     
T  9188366 atcttcaaaagaaattcatcaaacttacaatacaattgcctatgactttgtttcaatccatacaaagatttctttaaaagacataccttagacttgtcct 9188267  T
Q  217 ccacaaaaccttccg 231  Q
    |||||||||||||||    
T  9188266 ccacaaaaccttccg 9188252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 12404827 - 12404951
Alignment:
Q  108 acaaaactggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttag 207  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  12404827 acaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggcttttcttcaacccatacaaagatttcttcaaaagacacaccttag 12404926  T
Q  208 acttgtcccccacaaaaccttccgg 232  Q
    |||||||| ||| ||||||||||||    
T  12404927 acttgtcctccataaaaccttccgg 12404951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 12398521 - 12398618
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12398521 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaac 12398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 7073400 - 7073195
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| | |||| ||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  7073400 atatcatctacataaagaagatgatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 7073301  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||| |||||||||| | ||||||||| |  |||||  | |||||    
T  7073300 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaatccatacaaatatttcttcaacaaacacacttttgtattgtcttctacaaa 7073201  T
Q  224 accttc 229  Q
    ||||||    
T  7073200 accttc 7073195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 25408763 - 25408582
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  |||||||||| |||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  25408763 atatcatctacataaaggagaagatagataatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25408664  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| |||||||| |||||||||||||||||||  ||||||||||| | |||||||||    
T  25408663 ctaggaactcatcaaaccgacgataccactgcctaggactttgcttcaacccatacatggatttcttcaacaaacacacttt 25408582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 25404006 - 25403825
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  |||||||||| |||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  25404006 atatcatctacataaaggagaagatagataatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 25403907  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||  ||||||||||| | |||||||||    
T  25403906 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacatggatttcttcaacaaacacacttt 25403825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 3321620 - 3321825
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| |||||||||| |||| ||||| |  ||| |||||| ||||||   |||||   ||||||||||||||  | ||| |    
T  3321620 atatcatctacataaaggagaaggtagagaatgattttcccattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 3321719  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| ||||| |  |||||  | |||||    
T  3321720 ctaggaactcatcaaaccgacgataccattgccttggactttgcttcaacccatacaaagatttcttcaacaaacatacttttgtattgtcttctacaaa 3321819  T
Q  224 accttc 229  Q
    ||||||    
T  3321820 accttc 3321825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 5071564 - 5071619
Alignment:
Q  159 gggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtc 214  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||  |||||||||||    
T  5071564 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtc 5071619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 31400313 - 31400098
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31400313 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 31400214  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  31400213 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 31400114  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  31400113 ccacaaaaccttccgg 31400098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 33769805 - 33770020
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33769805 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 33769904  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  33769905 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 33770004  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  33770005 ccacaaaaccttccgg 33770020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 28806043 - 28805828
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  28806043 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagagtcatatccgcttctcacaaaaccg 28805944  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||     
T  28805943 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacgcaccttagacttgtcct 28805844  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  28805843 ccacaaaaccttccgg 28805828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 37559914 - 37559702
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37559914 catcaagatgtcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 37559815  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||     
T  37559814 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacgccttagacttgtcct 37559715  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  37559714 ccacaaaaccttc 37559702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 27446589 - 27446804
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27446589 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 27446688  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  27446689 gtcttcaaaagaaattcatcaaaacgacgataccattgcctagggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 27446788  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  27446789 ccacaaaaccttccgg 27446804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 43593887 - 43594102
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |    
T  43593887 catcaagatatcatccacatataaaagaagatagagaatgactttctcacttttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 43593986  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  43593987 gtcttcaaaagaaattcatcaaaacgacgataccattgcgtagggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 43594086  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  43594087 ccacaaaaccttccgg 43594102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 43626681 - 43626896
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |    
T  43626681 catcaagatatcatccacatataaaagaagatagagaatgactttctcacttttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 43626780  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  43626781 gtcttcaaaagaaattcatcaaaacgacgataccattgcgtagggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 43626880  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  43626881 ccacaaaaccttccgg 43626896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 28833825 - 28834040
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||  |    
T  28833825 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaatcatatccgcttctcacaaaatcg 28833924  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||      
T  28833925 gtcttcaaaagaaattcatcaaaccgacgatatcattgcctagggctttgcttcaacccatacaaagatttcttcaaaagatataccttagacttgtcat 28834024  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  28834025 ccacaaaaccttccgg 28834040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 24558845 - 24558693
Alignment:
Q  77 catgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaaccca 176  Q
    |||||||||||| ||||||||||||||||||||||||  | ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  24558845 catgtacacacatgaatcatatccgcttctcacaaaatcgatcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttggttcaaccca 24558746  T
Q  177 tacaaagatttcttcaaaagacacactttagacttgtcccccacaaaaccttc 229  Q
    || |||||||| ||||||||||| || |||||||||||| |||||||||||||    
T  24558745 tataaagatttattcaaaagacataccttagacttgtcctccacaaaaccttc 24558693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 24599877 - 24599725
Alignment:
Q  77 catgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaaccca 176  Q
    |||||||||||| ||||||||||||||||||||||||  | ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  24599877 catgtacacacatgaatcatatccgcttctcacaaaatcgatcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttggttcaaccca 24599778  T
Q  177 tacaaagatttcttcaaaagacacactttagacttgtcccccacaaaaccttc 229  Q
    || |||||||| ||||||||||| || |||||||||||| |||||||||||||    
T  24599777 tataaagatttattcaaaagacataccttagacttgtcctccacaaaaccttc 24599725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 25451088 - 25450901
Alignment:
Q  42 agaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaacc 141  Q
    ||||| ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |  || ||||  |||||||    
T  25451088 agaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagcctttactaggaactaatcaaacc 25450989  T
Q  142 gacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaaaccttc 229  Q
    |||||||||| | ||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||||||||    
T  25450988 gacgataccactaccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaaaccttc 25450901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 31301224 - 31301309
Alignment:
Q  143 acgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaaacctt 228  Q
    |||||| |||||||| ||  |||| |||||  | ||||| |||||||||||||||||||| ||||| |||||  ||| ||||||||    
T  31301224 acgatatcattgccttggattttgtttcaattcttacaatgatttcttcaaaagacacaccttagatttgtcttccataaaacctt 31301309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 18857342 - 18857557
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18857342 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 18857441  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  18857442 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 18857541  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  18857542 ccacaaaaccttccgg 18857557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 3791454 - 3791239
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| ||||||| |    
T  3791454 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaatcatatccgcttcttacaaaaccg 3791355  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||     
T  3791354 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttacttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 3791255  T
Q  217 ccacaaaaccttccgg 232  Q
    ||| ||||||||||||    
T  3791254 ccaaaaaaccttccgg 3791239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 16627313 - 16627100
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||  | ||| ||||||||||||||||||||||||||||||||||| ||||  |    
T  16627313 catcaagatatcatcaacatataaaagaagatagagaatgactctctcacccctctgcaacatgtacacacaagaatcatatccgcttctcaaaaaatcg 16627214  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||     
T  16627213 gtcttcaaaagaaattcatcaaaccgacgataccattgccttgggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 16627114  T
Q  217 ccacaaaaccttcc 230  Q
    | ||||||||||||    
T  16627113 ctacaaaaccttcc 16627100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 5144676 - 5144891
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  5144676 catcaagatatcatccacatataaaagaaggtagagaatgactttctcacccttcttcaacatgtacacacaagaatcttatccgcttctcacaaaaccg 5144775  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    | |||||||||||| || |||||| || |||||||||||| |||| |||||||||||||||||||||||||||| |||||||| || |||||||||||      
T  5144776 ggcttcaaaagaaattcatcaaactgatgataccattgcccagggatttgcttcaacccatacaaagatttctttaaaagacataccttagacttgtctt 5144875  T
Q  217 ccacaaaaccttccgg 232  Q
     |||||||||||||||    
T  5144876 tcacaaaaccttccgg 5144891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 9227653 - 9227542
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |    
T  9227653 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttttccaacatgtacacacaagaatcatatccgcttctcacaaaaccg 9227554  T
Q  117 gtcttcaaaaga 128  Q
    ||||||||||||    
T  9227553 gtcttcaaaaga 9227542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 15315666 - 15315485
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| |||||||| |||||||||||| |  ||| |||||| ||| ||  ||||||   ||||||||||||||| | ||| |    
T  15315666 atatcatctacataaaggagaaggtagagaataactttctcattccttctcatcatgtaaacataactatcatagttgcttctcacaaaactagccttta 15315567  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  15315566 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 15315485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 4568692 - 4568511
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  |||| |||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  |  || |    
T  4568692 atatcatcaacataaaggagaaaatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagcattta 4568593  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||| | |||||||||    
T  4568592 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaatatttcttcaacaaacacacttt 4568511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 16637485 - 16637341
Alignment:
Q  49 agagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaaccgacgata 148  Q
    |||||||||||||||||||| |  ||| |||||||||||||  ||||||   ||||||||||||||  | ||| | ||| ||||| |||||| |||||||    
T  16637485 agagaatgactttctcattccttctcatcatgtacacacaactatcatagttgcttctcacaaaaccagcctttacaaggaactcatcaaacagacgata 16637386  T
Q  149 ccattgcctagggctttgcttcaacccatacaaagatttcttcaa 193  Q
    ||| ||||| || ||||| ||||| ||||||||||||||||||||    
T  16637385 ccactgccttggactttgattcaatccatacaaagatttcttcaa 16637341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 9227552 - 9227510
Alignment:
Q  187 tcttcaaaagacacactttagacttgtcccccacaaaaccttc 229  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  9227552 tcttcaaaagacacaccttagacttgtcctccacaaaaccttc 9227510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 32477106 - 32477318
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32477106 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 32477205  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  32477206 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 32477305  T
Q  217 ccacaaaaccttc 229  Q
    | |||||||||||    
T  32477306 ctacaaaaccttc 32477318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 8513860 - 8514072
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8513860 catcaagatatcatccacatataaaagaagatagagaatgactttctcgttcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 8513959  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  8513960 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagtgctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 8514059  T
Q  217 ccacaaaaccttc 229  Q
    | |||||||||||    
T  8514060 ctacaaaaccttc 8514072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 2675541 - 2675326
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| |    
T  2675541 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacgcaagagtcatatccgcttctcacaaaaccg 2675442  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  2675441 gtcttcaaaagaaactcatcaaaccgaccataccattgcctaaggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 2675342  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  2675341 ccacaaaaccttccgg 2675326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 22171629 - 22171414
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22171629 catcaagatatcatccacatataaaagaagatagagaataaatttctcactcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 22171530  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  22171529 gtctttaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 22171430  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  22171429 ccacaaaaccttccgg 22171414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 1307637 - 1307849
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  1307637 catcaagatatcatccacatataaaagaaggtagagaatgaatttctcactcttcttcaacatgtacacataagaatcatatccgcttctcacaaaaccg 1307736  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||     
T  1307737 gtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 1307836  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  1307837 ccacaaaaccttc 1307849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 16256835 - 16257047
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  16256835 catcaagatatcatcaacatataaaacaaggtagagaatgactttctcactcctcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 16256934  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||     
T  16256935 gtctttaaaagaaattcatcaaatcgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcct 16257034  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  16257035 ccacaaaaccttc 16257047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 10609605 - 10609786
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||||||||| |  ||||| |||||||||||||||||||||||  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  10609605 atatcatccacataaaggagaaggtagagaatgactttctcattctttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 10609704  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||| ||| |||||    
T  10609705 ctaggaactcatcaaaccgacgataccactaccttggactttgcttcaacccatacaaagatttcttcaaaaaacaaacttt 10609786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 10900358 - 10900177
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| | |||||||||||||||||||||||||||| |  ||| |||||| ||| ||  ||||||   ||||||||||||||  | ||| |    
T  10900358 atatcatctacataaagaagaagatagagaatgactttctcattccttctcatcatgtaaacataactatcatagttgcttctcacaaaaccagccttta 10900259  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  10900258 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 10900177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 22622957 - 22623162
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  22622957 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 22623056  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| ||||| |  |||||  | |||||    
T  22623057 ctaggaactcatcaaaccgacgataccattgccttggactttgcttcaacccatacaaagatttcttcaacaaacatacttttgtattgtcttctacaaa 22623156  T
Q  224 accttc 229  Q
    ||||||    
T  22623157 accttc 22623162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 54191857 - 54191652
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  54191857 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 54191758  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||| ||||| |  |||||  | |||||    
T  54191757 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacatacttttgtattgtcttctacaaa 54191658  T
Q  224 accttc 229  Q
    ||||||    
T  54191657 accttc 54191652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 3326739 - 3326635
Alignment:
Q  125 aagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaaa 224  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||  | ||||||    
T  3326739 aagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacattccttagatttgtcttctacaaaa 3326640  T
Q  225 ccttc 229  Q
    |||||    
T  3326639 ccttc 3326635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 10095638 - 10095843
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  10095638 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 10095737  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| || | ||||||||| |  |||||  | |||||    
T  10095738 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccgtacaaagatttcttgaacaaacacacttttgtattgtcttctacaaa 10095837  T
Q  224 accttc 229  Q
    ||||||    
T  10095838 accttc 10095843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 10202524 - 10202729
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  10202524 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 10202623  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||||||||| |  |||||  | |||||    
T  10202624 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccgtacaaatatttcttgaacaaacacacttttgtattgtcttctacaaa 10202723  T
Q  224 accttc 229  Q
    ||||||    
T  10202724 accttc 10202729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 16460813 - 16460632
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| |||||||| |||||||||||| |  ||| |||||| ||||||   |||||   ||||||||||||||  | ||| |    
T  16460813 atatcatctacataaaggagaaggtagagaatcactttctcattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 16460714  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  16460713 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 16460632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 47879721 - 47879926
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  47879721 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 47879820  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || || || |||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  47879821 ctaggaattcatcaatccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 47879920  T
Q  224 accttc 229  Q
    ||||||    
T  47879921 accttc 47879926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 3326810 - 3326735
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaa 92  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||  | |||||||||||||||||||||||    
T  3326810 catcaagatatcatccacatatagaagaaggtagagaatgactttctcacccatcttcaacatgtacacacaagaa 3326735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 9149655 - 9149586
Alignment:
Q  42 agaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaa 111  Q
    ||||| ||||||||||||||||| |  ||||| ||||||||| ||||| ||||||| |||||||||||||    
T  9149655 agaaggtagagaatgactttctcctctttctttaacatgtacgcacaaaaatcatacccgcttctcacaa 9149586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 33334397 - 33334182
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33334397 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 33334298  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||     
T  33334297 gtcttcaaaagaaactcatcaaactgacgataccattgcctagggctttgcttcaacccgtacaaagatttcttcaaaagacacaccttagacttgtcct 33334198  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  33334197 ccacaaaaccttccgg 33334182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 14740892 - 14740678
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14740892 catcaagatatcatccacatataaaagaagatagagaatgtctttctcactcttcttcaacatgtacacaca-gaatcatatccgcttctcacaaaactg 14740794  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  14740793 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcct 14740694  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  14740693 ccacaaaaccttccgg 14740678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 24714559 - 24714730
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||| |||||||||||||||| |    
T  24714559 catcaagatatcatacacatataaaagaaggtagagaatgactttctcacccttcttcaacatgtacatacaagaatcatagccgcttctcacaaaaccg 24714658  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaa 194  Q
    |||||||||||||| || ||||||||||||      |||||||||||||||||||| |||||||||||||||||||||    
T  24714659 gtcttcaaaagaaattcatcaaaccgacga------tgcctagggctttgcttcaatccatacaaagatttcttcaaa 24714730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 35202895 - 35203100
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  35202895 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 35202994  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  35202995 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 35203094  T
Q  224 accttc 229  Q
    ||||||    
T  35203095 accttc 35203100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 13882064 - 13881883
Alignment:
Q  48 tagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaaccgacgat 147  Q
    ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |  || ||||| |||||||||||||    
T  13882064 tagagaatgactttctcattccttctcatcatgtatacacaactatcatagttgcttctcacaaaaccagcctttactaggaactcatcaaaccgacgat 13881965  T
Q  148 accattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaaaccttc 229  Q
    |||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||||||||    
T  13881964 accactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaaaccttc 13881883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 17691789 - 17691865
Alignment:
Q  129 aactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
    ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  17691789 aactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaataaacacacttt 17691865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 22347917 - 22347986
Alignment:
Q  136 caaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||| |||||||||| | |||||||||    
T  22347917 caaaccgacgatacctctgccttggactttgcttcaacccatacaaatatttcttcaacaaacacacttt 22347986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 25944907 - 25944813
Alignment:
Q  135 tcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaaaccttc 229  Q
    ||||||||||||||||| ||||| || |||||||||||||| |||||| ||||||| || | ||||||||| |  |||||  | |||||||||||    
T  25944907 tcaaaccgacgataccactgccttggactttgcttcaacccgtacaaaaatttcttaaacaaacacacttttgtattgtcttctacaaaaccttc 25944813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 22345832 - 22345921
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaa 113  Q
    |||||||| |||||||  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   |||||||||||||    
T  22345832 atatcatctacatataggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaa 22345921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 19346044 - 19346259
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19346044 catcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 19346143  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||     
T  19346144 gtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagattttttcaaaagacacaccttagacttgtcct 19346243  T
Q  217 ccacaaaaccttccgg 232  Q
    ||||||||||||||||    
T  19346244 ccacaaaaccttccgg 19346259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 31057725 - 31057937
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  31057725 catcaagatatcatccacatataaaagaaggtagagaatgactttc-cacccctcttcaacatgtacacacaagaatcatatccgcttctcacaaaaccg 31057823  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||||||     
T  31057824 gtcttcaaaagaaattcatcaaaccgacgataccatttcctagggttttgcttcaactcatacaaagatttcttcaaaagacataccttagacttgtcct 31057923  T
Q  217 ccacaaaaccttcc 230  Q
    ||||||||||||||    
T  31057924 ccacaaaaccttcc 31057937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 39486532 - 39486320
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||      
T  39486532 catcaagatatcatccacatataaaagaagatagagaatgactttcacaaacatcttcaacatgtacacacaagaatcatatccgcttctcacaaaacca 39486433  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    |||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |  ||||||||||||     
T  39486432 gtcttcaaaagaaattcatcaaaccgacgatatcattgtctagggctttgcttcaacccatacaaagatatcttcaaaagacatatcttagacttgtcct 39486333  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  39486332 ccacaaaaccttc 39486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 39484524 - 39484738
Alignment:
Q  18 atcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactgg 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  | ||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  39484524 atcaagatatcatccacatataaaagaaggtagagaatgactttctcacccatctccaacatgtacacacaagaatcatatctgcttctcacaaaaccgg 39484623  T
Q  118 tcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccc 217  Q
    ||||||||||||| || | ||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  39484624 tcttcaaaagaaattcataaaaacaacgataccattgcctaaggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctc 39484723  T
Q  218 cacaaaaccttccgg 232  Q
     ||||||||||||||    
T  39484724 tacaaaaccttccgg 39484738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 39685596 - 39685415
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  39685596 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 39685497  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||| | |||||||||    
T  39685496 ctaggaactcatcaaaccgacgataccactgctttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 39685415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 31134880 - 31134692
Alignment:
Q  41 aagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaac 140  Q
    |||||| |||||||||||||| |||| |||||| || ||||||||| || ||||||| |  ||||| |||| || |||||||||||||||||| ||||||    
T  31134880 aagaaggtagagaatgactttttcatccttctttaatatgtacacataaaaatcatacctacttcttacaacaccggtcttcaaaagaaactcatcaaac 31134781  T
Q  141 cgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaaaccttcc 230  Q
     || || || |||| || || ||||| |||||| |||||||  ||||||||||||||||||  || ||||||||| ||| ||||||||||    
T  31134780 tgatga-actattgtcttggactttgtttcaacacatacaacaatttcttcaaaagacacatcttggacttgtcctccataaaaccttcc 31134692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 17942170 - 17942004
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||    ||| |    
T  17942170 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccaaccttta 17942071  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttctt 190  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  17942070 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttctt 17942004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 22714066 - 22714247
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| |||||||| |||||||||||| |  ||| |||||| ||||||   |||||   ||||||||||||||  | ||| |    
T  22714066 atatcatctacataaaggagaaggtagagaataactttctcattccttctcatcatgtaaacacaactgtcatagttgcttctcacaaaaccagccttta 22714165  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  22714166 ctaggaactcatcaaaccgacgataccaatgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 22714247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 2739554 - 2739389
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  2739554 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 2739455  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttct 189  Q
      || ||||| ||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  2739454 ctaggaactcatcataccgacgataccactgccttggactttgcttcaacccatacaaagatttct 2739389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 20051594 - 20051774
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  20051594 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtagacacaactatcatagttgcttctcacaaaaccagccttta 20051693  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
      || ||||| |||||||||||||| || ||||| || ||||||||||||| |||||||| ||||||||| | |||||||||    
T  20051694 ctaggaactcatcaaaccgacgata-cactgccttggactttgcttcaaccgatacaaagttttcttcaacaaacacacttt 20051774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 47101328 - 47101115
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||  | | ||||||||||| ||||||||||||||||||||||||||||| | |    
T  47101328 catcaacatatcatccacatataaaagaagttagagaatgactttctcaccccttttcaacatgtatacacaagaatcatatccgcttctcacaaatccg 47101229  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
     ||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||     
T  47101228 atcttcaaaagaaattcatcaaaccgacgataccattgtctatggctttgcttcaacctatacaaagatttcttcaaaagacataccttagacttgtcct 47101129  T
Q  217 ccacaaaaccttcc 230  Q
    ||||||||||||||    
T  47101128 ccacaaaaccttcc 47101115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 47702357 - 47702146
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||||||  | |||||||||||| |||||||||||||||||||||||| ||||||| |    
T  47702357 catcaagatatcatcaacatatagaagaaggtagagaatgactttctcacccctcttcaacatgt-cacacaagaatcatatccgcttcttacaaaaccg 47702259  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
    || | ||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |     
T  47702258 gtttccaaaagaaattcatcaaactgatgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgttct 47702159  T
Q  217 ccacaaaaccttc 229  Q
    |||||||||||||    
T  47702158 ccacaaaaccttc 47702146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 41395102 - 41395232
Alignment:
Q  102 cttctcacaaaactggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacaca 201  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41395102 cttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttggttcaacccatacaaagatttcttcaaaagacaca 41395201  T
Q  202 ctttagacttgtcccccacaaaaccttccgg 232  Q
    | |||||||||||| ||||||||||||||||    
T  41395202 ccttagacttgtcctccacaaaaccttccgg 41395232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 41392218 - 41392307
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41392218 catcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaatcatatccgcttct 41392307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 2396105 - 2396268
Alignment:
Q  42 agaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaacc 141  Q
    ||||| ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||| | ||| |  || ||||| |||||||    
T  2396105 agaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaactagcctttactaggaactcatcaaacc 2396204  T
Q  142 gacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacttt 205  Q
    |||||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||||||    
T  2396205 gacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttt 2396268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 9525077 - 9524872
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactggtcttca 123  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |  ||| |||||| ||||||  ||||||   ||||||||||||||  | ||| |    
T  9525077 atatcatctacataaaggagaaggtagagaatgactttctcattccttctcatcatgtaaacacaactatcatagttgcttctcacaaaaccagccttta 9524978  T
Q  124 aaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtcccccacaaa 223  Q
      || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| | ||||||||| |  |||||  | |||||    
T  9524977 ctaggaactcatcaaaccgacgataccactgccttggactttgcttcaacccatacaaagatttcttcaacaaacacacttttgtattgtcttctacaaa 9524878  T
Q  224 accttc 229  Q
    ||||||    
T  9524877 accttc 9524872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 34689874 - 34689683
Alignment:
Q  18 atcaagatatcatccacatataaaagaagatagagaatgactttctcattc-ttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||| |||||||||| ||||  ||| ||  ||||||||| |||||||| | || || || ||||| ||| || ||||||| ||  ||||||||||||      
T  34689874 atcaatatatcatccatatattgaagtaggaagagaatgattttctcatcccttttttaatatgtaaacataataatcataaccttttctcacaaaacat 34689775  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttaga 208  Q
    || |||||||||||||| ||||||| | || |||||| |||  |||| || |||||| ||||||||| ||| ||| |||||||||| |||||    
T  34689774 gtgttcaaaagaaactcatcaaacccatgacaccatttccttaggctatgtttcaacacatacaaaggtttgttctaaagacacaccttaga 34689683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 34694402 - 34694211
Alignment:
Q  18 atcaagatatcatccacatataaaagaagatagagaatgactttctcattc-ttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||| |||||||||| ||||  ||| ||  ||||||||| |||||||| | || || || ||||| ||| || ||||||| ||  ||||||||||||      
T  34694402 atcaatatatcatccatatattgaagtaggaagagaatgattttctcatcccttttttaatatgtaaacataataatcataaccttttctcacaaaacat 34694303  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttaga 208  Q
    || |||||||||||||| ||||||| | || |||||| |||  |||| || |||||| ||||||||| ||| ||| |||||||||| |||||    
T  34694302 gtgttcaaaagaaactcatcaaacccatgacaccatttccttaggctatgtttcaacacatacaaaggtttgttctaaagacacaccttaga 34694211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 7155329 - 7155209
Alignment:
Q  78 atgtacacacaagaatcatatccgcttctcacaaaactggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccat 177  Q
    ||||||||| |||||||||||||  ||||| || ||| ||||||||||||||| |  |||||| ||||||||||||     |||||||| |||||  |||    
T  7155329 atgtacacataagaatcatatcc--ttctcccacaaccggtcttcaaaagaaatttctcaaactgacgataccattcatgtgggctttgtttcaaggcat 7155232  T
Q  178 acaaaga-tttcttcaaaagaca 199  Q
    ||||||| ||| |||||||||||    
T  7155231 acaaagatttttttcaaaagaca 7155209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 33806 - 34017
Alignment:
Q  17 catcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaatcatatccgcttctcacaaaactg 116  Q
    ||||||||||||||| |||||||||||||| || |||||||||| || |  |||||| ||||| |||||||||||||||||   |||||| | |||||||    
T  33806 catcaagatatcatctacatataaaagaagttatagaatgacttcctaagccttctttaacatatacacacaagaatcatacatgcttctaa-aaaactg 33904  T
Q  117 gtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacactttagacttgtccc 216  Q
     |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  33905 atcttcaaaagaaactcatcaaaccgacgataccatttcctaggactttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcct 34004  T
Q  217 ccacaaaaccttc 229  Q
    || ||||||||||    
T  34005 ccccaaaaccttc 34017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1764 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 68 - 3
Alignment:
Q  24 atatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaa 89  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |  ||| |||||| ||||||    
T  68 atatcatctacataaaggagaagatagagaatgactttctcattccttctcatcatgtaaacacaa 3  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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