View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_121 (Length: 245)
Name: NF8921_low_121
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_121 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 1483461 - 1483228
Alignment:
| Q |
12 |
tggacatcataatcatttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatag |
111 |
Q |
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| T |
1483461 |
tggacatcataatcatttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatag |
1483362 |
T |
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| Q |
112 |
aagcaccaaaacaattttattccggaaaacctcattattcattaaatagctcttttaacatgtttttagaccagtgggtgcattcttgttaactttcaaa |
211 |
Q |
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| T |
1483361 |
aagcaccaaaacaattttattccggaaaacctcattattcattaaatagctcttttaacatgtttttagaccagtgggtacattcttgttaactttcaaa |
1483262 |
T |
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| Q |
212 |
tctagaagtttaagatatgcatgtattacaacat |
245 |
Q |
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| T |
1483261 |
tctagaagtttaagatatgcatgtattacaacat |
1483228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 1443245 - 1443124
Alignment:
| Q |
12 |
tggacatcataatcatttataagctttgaaaacaggtccttttattatatatttcccttttaagatcttctctgagcttcttttcttaaacttccaatag |
111 |
Q |
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|||||||||||||| |||||||| |||||||||| || ||| ||||||||||||| | ||||||| ||| ||| |||||||||||||||||||| ||| |
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| T |
1443245 |
tggacatcataatcttttataaggtttgaaaacaagtgcttctattatatatttctc-tttaagaacttttctaagcttcttttcttaaacttcagataa |
1443147 |
T |
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| Q |
112 |
aagcaccaaaacaattttattcc |
134 |
Q |
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| T |
1443146 |
aagcagtaaaacaattttattcc |
1443124 |
T |
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