View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_122 (Length: 244)
Name: NF8921_low_122
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_122 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1483216 - 1482983
Alignment:
| Q |
1 |
ttgatagtagaaaaaactcctacagaagggacattgcttttaacatctaatgaattcgacattacacatcagcaataatcagatcatgcaatatttacta |
100 |
Q |
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| T |
1483216 |
ttgatagtagaaaaaactcctacagaagggacattgcttttaacatctaatgaattctacattacacatcagcaataatcagatcatgcaatatttacta |
1483117 |
T |
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| Q |
101 |
gtacaagtgaagaagaaattcaacacatacctttaaatgataattcttctgtaaggattgccgaacctgaccagagtatatgtcacacacatcgaccaat |
200 |
Q |
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| T |
1483116 |
gtacaagtgaagaagaaattcaacacatacctttaaatgataattcttctgtaaggattgccgaacctgaccagagtatatgtcacacacatcgaccaat |
1483017 |
T |
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| Q |
201 |
taaatataaaccctaaaaaatgagaatgatgtcc |
234 |
Q |
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| T |
1483016 |
taaatataaaccctaaaaaatgagaatgatgtcc |
1482983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 1442902 - 1442737
Alignment:
| Q |
21 |
tacagaagggacattgcttttaacatctaatgaattcgacattacacatcagcaataatcagatcatgcaatatttactagtacaagtgaagaagaaatt |
120 |
Q |
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|||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
1442902 |
tacagaagagacattgattttaacatctaatggattctacattacacatcagcaataatcagaa---gtaacatttactagtacaagtgaagaagaaatt |
1442806 |
T |
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| Q |
121 |
caacacatacctttaaatgataattcttctgtaaggattgccgaacctgaccagagtatatgtcacaca |
189 |
Q |
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| T |
1442805 |
caacacatacctgtaagtgataattcttttgtaagttttgtcgaacctgaccagtgtatatgccacaca |
1442737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 31684 - 31730
Alignment:
| Q |
128 |
tacctttaaatgataattcttctgtaaggattgccgaacctgaccag |
174 |
Q |
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| T |
31684 |
tacctttaagtgatatttcttctgtaaggattgccgaacttgaccag |
31730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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