View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_123 (Length: 241)
Name: NF8921_low_123
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_123 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21317025 - 21317270
Alignment:
| Q |
1 |
cctataggaaaaatgaactgtacctcttgagcaacaaggtgttgctccttcacctgtgaattgaattacaataactagtcatatgctccttctgaaagag |
100 |
Q |
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|||||| |||||||||||||||||||||||| || | |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
21317025 |
cctatacgaaaaatgaactgtacctcttgagaaaga-ggtgttcctccttcacctgtgagttgaattacgataactagtcatatgctccttctgaaagag |
21317123 |
T |
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| Q |
101 |
agggggtgtattttcaaaagacactccaacacccaaataagaatggatgctagaaggtatcaaaagtggtaagtcattaaagtga------ttgtacatg |
194 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
21317124 |
agggggtgtattttcaaaagacactccaacacttaaataagaatgggtgctagaaggtatcaaaagtggtaagtcattaaagtgatcgtactcgtacatg |
21317223 |
T |
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| Q |
195 |
tgtgatgaggcccctatttatagtggtgggttaatcttataagctat |
241 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21317224 |
tgtggtgaggcccctatttatagtggcgggttaatcttataagctat |
21317270 |
T |
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