View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_138 (Length: 219)
Name: NF8921_low_138
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_138 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 42790332 - 42790511
Alignment:
| Q |
20 |
taatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagttagttctaaaaccattaataaagtactt |
119 |
Q |
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| T |
42790332 |
taatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagttagttctaaaaccattaataaagtac-- |
42790429 |
T |
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| Q |
120 |
aattaggagctaattataataagacgacttattcaagatatatattaacatacttgattttctgccaatcccatttgtataacacca |
206 |
Q |
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| T |
42790430 |
--ttaggagctaattataataa---gacttattcaagatatatattaacatacttgattttctgccaatcccatttgtataacacca |
42790511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 42799872 - 42800051
Alignment:
| Q |
20 |
taatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagttagttctaaaaccattaataaagtactt |
119 |
Q |
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| T |
42799872 |
taatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagttagttctaaaaccattaataaagtac-- |
42799969 |
T |
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| Q |
120 |
aattaggagctaattataataagacgacttattcaagatatatattaacatacttgattttctgccaatcccatttgtataacacca |
206 |
Q |
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| T |
42799970 |
--ttaggagctaattataataa---gacttattcaagatatatattaacatacttgattttctgccaatcccatttgtataacacca |
42800051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 34568208 - 34568240
Alignment:
| Q |
170 |
tacttgattttctgccaatcccatttgtataac |
202 |
Q |
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| T |
34568208 |
tacttgattttctgccaagcccatttgtataac |
34568240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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