View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_14 (Length: 694)

Name: NF8921_low_14
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_14
NF8921_low_14
[»] chr4 (8 HSPs)
chr4 (11-443)||(31293452-31293891)
chr4 (445-684)||(3510239-3510476)
chr4 (427-642)||(44100605-44100822)
chr4 (427-633)||(12227366-12227572)
chr4 (597-678)||(12227005-12227087)
chr4 (591-664)||(44101110-44101185)
chr4 (597-662)||(23124295-23124361)
chr4 (601-665)||(14089364-14089427)
[»] chr3 (9 HSPs)
chr3 (449-678)||(29788079-29788308)
chr3 (427-679)||(4812273-4812519)
chr3 (451-606)||(29634821-29634976)
chr3 (427-664)||(20409619-20409857)
chr3 (440-624)||(3162483-3162676)
chr3 (429-498)||(17370924-17370993)
chr3 (597-665)||(29787760-29787829)
chr3 (601-660)||(29634443-29634503)
chr3 (430-498)||(55390799-55390867)
[»] scaffold0591 (1 HSPs)
scaffold0591 (431-684)||(2739-2989)
[»] chr1 (10 HSPs)
chr1 (427-673)||(39899740-39899974)
chr1 (427-660)||(26793430-26793664)
chr1 (525-664)||(19262263-19262404)
chr1 (449-665)||(27799802-27800020)
chr1 (597-678)||(36321409-36321491)
chr1 (592-678)||(39899416-39899503)
chr1 (546-664)||(48706754-48706873)
chr1 (597-660)||(27800288-27800349)
chr1 (525-649)||(21760254-21760379)
chr1 (458-498)||(48706930-48706970)
[»] scaffold0294 (1 HSPs)
scaffold0294 (429-678)||(1143-1388)
[»] chr7 (21 HSPs)
chr7 (429-580)||(28008887-28009038)
chr7 (505-671)||(16651188-16651354)
chr7 (505-671)||(17625548-17625714)
chr7 (449-562)||(13304207-13304317)
chr7 (525-664)||(12083148-12083289)
chr7 (597-664)||(16886352-16886420)
chr7 (448-678)||(44110145-44110375)
chr7 (598-674)||(36337965-36338042)
chr7 (598-678)||(44109844-44109924)
chr7 (599-676)||(1319249-1319327)
chr7 (597-662)||(12083682-12083748)
chr7 (427-516)||(29656499-29656588)
chr7 (427-487)||(23553538-23553598)
chr7 (585-620)||(12678370-12678405)
chr7 (598-649)||(23554020-23554071)
chr7 (524-642)||(1321515-1321633)
chr7 (601-678)||(13304102-13304180)
chr7 (597-668)||(16650962-16651035)
chr7 (597-668)||(17625322-17625395)
chr7 (429-498)||(26926619-26926688)
chr7 (525-664)||(31267293-31267433)
[»] chr8 (9 HSPs)
chr8 (473-678)||(12785015-12785222)
chr8 (427-581)||(22843252-22843404)
chr8 (429-528)||(32108890-32108989)
chr8 (598-673)||(32108414-32108489)
chr8 (599-662)||(12784699-12784763)
chr8 (597-678)||(32108729-32108811)
chr8 (525-580)||(12504688-12504744)
chr8 (525-664)||(26140369-26140509)
chr8 (650-678)||(29370604-29370632)
[»] chr5 (15 HSPs)
chr5 (427-664)||(7575951-7576189)
chr5 (527-673)||(26604450-26604597)
chr5 (597-678)||(26604124-26604206)
chr5 (525-649)||(19748281-19748406)
chr5 (427-568)||(37396826-37396967)
chr5 (536-664)||(25360328-25360458)
chr5 (598-664)||(16417952-16418019)
chr5 (597-662)||(19748588-19748654)
chr5 (597-662)||(25360095-25360161)
chr5 (601-664)||(16417623-16417687)
chr5 (524-674)||(11477742-11477892)
chr5 (597-665)||(11477419-11477488)
chr5 (603-673)||(19575749-19575820)
chr5 (597-663)||(37397327-37397394)
chr5 (427-496)||(16418125-16418194)
[»] chr2 (10 HSPs)
chr2 (445-676)||(37059025-37059253)
chr2 (449-581)||(5306404-5306536)
chr2 (546-664)||(11718995-11719115)
chr2 (597-678)||(20529277-20529359)
chr2 (597-662)||(11719355-11719421)
chr2 (525-611)||(18332775-18332862)
chr2 (603-664)||(23282593-23282655)
chr2 (525-664)||(28746811-28746951)
chr2 (559-664)||(18878758-18878863)
chr2 (597-664)||(5305176-5305244)
[»] chr6 (14 HSPs)
chr6 (449-584)||(23607883-23608018)
chr6 (525-664)||(2402414-2402553)
chr6 (583-678)||(3386269-3386365)
chr6 (525-664)||(24560030-24560171)
chr6 (598-678)||(11117220-11117300)
chr6 (598-677)||(22962277-22962357)
chr6 (598-677)||(23826036-23826116)
chr6 (597-664)||(24560436-24560504)
chr6 (428-498)||(14095755-14095825)
chr6 (525-664)||(19243009-19243150)
chr6 (602-664)||(19243415-19243478)
chr6 (429-498)||(5973051-5973120)
chr6 (537-678)||(33200341-33200482)
chr6 (525-664)||(18743828-18743967)
[»] scaffold0086 (1 HSPs)
scaffold0086 (597-677)||(45922-46003)
[»] scaffold0121 (1 HSPs)
scaffold0121 (559-664)||(5601-5707)
[»] scaffold0015 (1 HSPs)
scaffold0015 (598-661)||(22174-22238)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 31293891 - 31293452
Alignment:
Q  11 tttggtgttgacttcaatgccaaatttctttctctcttattttaagatgccatataaggtgtggaagaaaatcgtgaaaattcaaagtttttccaaacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| || ||||||| ||    
T  31293891 tttggtgttgacttcaatgccaaatttctttctctcttattttaagatgtcatataaggtgtggtagaaaattgtgaaaattcaaaattattccaaataa 31293792  T
Q  111 aaa-gattcattgggtgaagttggaggatatttgtaagtctaaggaggaggggttttggggataaaggatttgaaaattttcaatttagctctccttt-t 208  Q
    ||| | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |    
T  31293791 aaaaggttcattgggtgaagttggaa-atatttgtaagtctaaggaggaggggttttggggataaaggatttgaaaattttcaatttagttctccttgct 31293693  T
Q  209 aaatggaagtgatgattgttgaatgaagaaaaggtggtgtagaaagaggtgttgtggtcgaaatatgtaggtagtgtcacctatacttcaaa--tttttt 306  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||||    
T  31293692 aagtggaagtgatgattgttgaatgaagaaaaggtggtgtagcaagaggtgttgtggtcaaaaaatgtaggtagtgtcacctatacttcaaatctttttt 31293593  T
Q  307 ctagagataaat-------nnnnnnnnnnnntctcccctttggtggaaggattaacgaaatttgggtaaggaggggtcgtaagaaaatgattggtttatg 399  Q
    ||||||||||||                   | | |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  31293592 ctagagataaatataaaaaaaaaataaaaaatattccctttggtggaaggattaatgaaatttgggtaaggaagggtcgtaagaaaatgattggtttatg 31293493  T
Q  400 gagtttgttctcgacggttacgtgaggaacatgttctcgatgat 443  Q
    ||||||||||||||||   |||||||||| ||||||||||||||    
T  31293492 gagtttgttctcgacg---acgtgaggaatatgttctcgatgat 31293452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 445 - 684
Target Start/End: Complemental strand, 3510476 - 3510239
Alignment:
Q  445 gagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtcctta 544  Q
    |||||||||| ||||||||||| |||||||||| |||||||||  ||||||||| | || ||||||||   ||||||| | ||||||||| ||||| |||    
T  3510476 gagttggatgtttcgttgttgaaatcttctgaaaatattctcaaaagtttgattcggtctgatgaaga---ttaagttgttttattatgtagtgtcatta 3510380  T
Q  545 ctttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaatt 644  Q
     ||||||||| || |||||||||| |  ||||||| | || ||  |  ||| ||||||||||||||||||||||||||||||   |||| ||| |||| |    
T  3510379 ttttgttggaattaagtttaattcatggtagtttgttgaagatgtttgcattgaagtgtcttatacttagtgtaaatgtttgtttgtctctttgaaaact 3510280  T
Q  645 c-aaaaaatgaagagaacacattttgtattctacctgatga 684  Q
    | ||||||||||||||| |  |||| |||||||||| ||||    
T  3510279 cgaaaaaatgaagagaaaatgttttttattctacctaatga 3510239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 427 - 642
Target Start/End: Original strand, 44100605 - 44100822
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||  ||| ||| ||| |||||||| | ||| |||||||  ||||||||||||||| || ||||||| | ||||| ||||||||||| ||  |||    
T  44100605 aacatgtttccgaggatcgagatggatgctacattgctgagatcacctgaagatattctcaagaatttgattcggtcagaggaagatgtttaggtattat 44100704  T
Q  527 tatta-tgttgtgtcctt-actttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtt 624  Q
    ||||| | || |||| ||   ||| ||||| ||||||||||||||| |||||||| | || ||  || ||| ||| |||||||||||||||  ||| |||    
T  44100705 tattattattatgtcattgttttttttggattttagtttaattcttgttagtttgttgaagatgttggcattgaattgtcttatacttagttcaaaagtt 44100804  T
Q  625 tgcaagtctgtttaaaaa 642  Q
    ||||||||| ||| ||||    
T  44100805 tgcaagtctatttcaaaa 44100822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 633
Target Start/End: Complemental strand, 12227572 - 12227366
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatt-tgatcagatgaagatgtttaagttcta 525  Q
    ||||||||||||| ||| ||| ||||||||  |||| ||||||    |||  ||||| ||| |||||||||| || | ||||||  ||||||| ||  ||    
T  12227572 aacatgttctcgaggatcgagatggatgctatgttgctgagattgcttgagtatattttcatgagtttgattatgct-agatgattatgtttaggtaata 12227474  T
Q  526 ttattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgttt 625  Q
    |||||||||||||||  || |||| | || ||||||||||||||| ||| |||||| || ||  |||||| ||||||| ||||| |||| ||||| ||||    
T  12227473 ttattatgttgtgtcaatattttgctcgattttagtttaattcttgttaatttgctgaagatgttgacattgaagtgtgttatagttagcgtaaaggttt 12227374  T
Q  626 gcaagtct 633  Q
    ||||||||    
T  12227373 gcaagtct 12227366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 12227005 - 12227087
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaaaatgaagagaacaca--ttttgtattctacc 678  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||| || || |||||||||||||||   |||||||||||||    
T  12227005 gaagtgtcttatacttagtgtaaaaatttgcaagtctctttaaaaactc-aagaatgaagagaacacaacatttgtattctacc 12227087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 664
Target Start/End: Complemental strand, 44101185 - 44101110
Alignment:
Q  591 gacatggaagtgtcttatacttagtgt-aaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    ||||| ||||||||||||||||||||| |||  ||||||||||| ||| |||| |||||| |||||||||||||||    
T  44101185 gacattgaagtgtcttatacttagtgtaaaaaatttgcaagtctctttcaaaactcaaaagaatgaagagaacaca 44101110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 662
Target Start/End: Original strand, 23124295 - 23124361
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgttt-aaaaattcaaaaaatgaagagaaca 662  Q
    |||||||||||| ||||| ||||| ||||| |||||||||| |||| || ||| |||||||||||||    
T  23124295 gaagtgtcttatgcttagggtaaaggtttgtaagtctgtttgaaaacttaaaataatgaagagaaca 23124361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 665
Target Start/End: Original strand, 14089364 - 14089427
Alignment:
Q  601 tgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaaaatgaagagaacacat 665  Q
    ||||||||||||||||||||  ||||| ||||| ||| |||| || || ||||||||||||||||    
T  14089364 tgtcttatacttagtgtaaaaatttgctagtctctttgaaaactc-aagaatgaagagaacacat 14089427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 449 - 678
Target Start/End: Complemental strand, 29788308 - 29788079
Alignment:
Q  449 tggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtccttacttt 548  Q
    ||||| |||||||| |||||||   |||||| ||||||| |||||||||| | ||||||||||||||||| ||  ||||||||||| ||||| ||| |||    
T  29788308 tggatacttcgttgctgagatcacttgaagaaattctcaagagtttgattcggtcagatgaagatgtttaggtagtattattatgtagtgtctttatttt 29788209  T
Q  549 gttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaa 648  Q
    ||| || ||||||||||||| |  ||||||||| || ||  |||||| |||||||||||||||||| |||||  ||||||||||| ||| |||| |||||    
T  29788208 gtttgattttagtttaattcatggtagtttgctgaagatgttgacattgaagtgtcttatacttagcgtaaaaatttgcaagtctctttgaaaactcaaa 29788109  T
Q  649 a-aatgaagagaacacattttgtattctacc 678  Q
    | ||||||||||||||  |||||||||||||    
T  29788108 agaatgaagagaacac-gtttgtattctacc 29788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 427 - 679
Target Start/End: Original strand, 4812273 - 4812519
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||||||| |||  ||||||||| || |||| |||||||||||||||||||||||| || ||||||| |  |||||||    | ||| ||| |||    
T  4812273 aacatgttctcgacgatcaagttggatgttttgttggtgagatcttctgaagatattctcatgactttgattcggccagatga----gattaggttgtat 4812368  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttg 626  Q
    |||||| ||||||| ||| || |||||| ||||||||||||||| |||||||| | || | | ||  |   |||||| |||||||||||||||| |||||    
T  4812369 tattatattgtgtcattatttggttggattttagtttaattcttgttagtttggtgaaga-agtgttaa--aagtgttttatacttagtgtaaaggtttg 4812465  T
Q  627 caagtctgtttaaaaattc-aaaaaatgaagagaacacattttgtattctacct 679  Q
      ||||| ||| |||| || |||||| |||||||||||||||||||||||||||    
T  4812466 tcagtctctttcaaaactcgaaaaaacgaagagaacacattttgtattctacct 4812519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 451 - 606
Target Start/End: Complemental strand, 29634976 - 29634821
Alignment:
Q  451 gatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtccttactttgt 550  Q
    |||||| ||||| |||||||  ||||||||||||||| |||||||| | | |||||||||| ||| || ||  ||||||||||||||||||||| |||||    
T  29634976 gatgctccgttgctgagatcgcctgaagatattctcaagagtttgaatcggtcagatgaaggtgtgtaggtagtattattatgttgtgtccttattttgt 29634877  T
Q  551 tggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtctt 606  Q
    || | ||||||||||||||| |||||||||| || ||  |||||| ||||||||||    
T  29634876 tgaattttagtttaattcttgttagtttgctgaagatgttgacattgaagtgtctt 29634821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 427 - 664
Target Start/End: Complemental strand, 20409857 - 20409619
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||| ||| ||||||| | |||||| | |||||||||||  || |||||||| ||| ||||||||||    |||||||  | ||||| ||  |||    
T  20409857 aacatgttcccgaggattgagatcgatgctacattgttgagatcgccttaagatattttcaagagtttgattatgccagatgattaagtttaggtagtat 20409758  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttg 626  Q
    |||||||||||| | ||| ||||||||| |||||||||| |||| |||| ||  | || ||  || ||| ||||||| | ||| |||| ||||| |||||    
T  20409757 tattatgttgtgccattattttgttggattttagtttaactcttgttagctttttgaagatgttggcattgaagtgtgtgatagttagcgtaaaggtttg 20409658  T
Q  627 caagtctgtttaaaaattca-aaaaatgaagagaacaca 664  Q
    ||||||| ||| |||| ||| || |||||||||||||||    
T  20409657 caagtctctttcaaaactcacaagaatgaagagaacaca 20409619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 624
Target Start/End: Complemental strand, 3162676 - 3162483
Alignment:
Q  440 tgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgt---------ttaagttctattatt 530  Q
    |||| |||||||||| ||| ||||| ||||||||| |||||||||| | |||||||||| | ||||||||||||||         |||| || |||||||    
T  3162676 tgatcgagttggatgtttccttgtttagatcttctaaagatattctgaagagtttgattcgctcagatgaagatgttaggttgtattaaattgtattatt 3162577  T
Q  531 atgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtt 624  Q
    |||| ||||| ||| ||| ||||| || |||||||||| |  ||||||| | || ||  |  | | ||||||||||||||||| ||||||||||    
T  3162576 atgtagtgtcattattttattggaattaagtttaattcatggtagtttgttgaagatgttttctttgaagtgtcttatacttaatgtaaatgtt 3162483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 17370924 - 17370993
Alignment:
Q  429 catgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatt 498  Q
    ||||||| ||||||||||| ||| |||  |||||||||| ||  ||||||||||||||| ||||||||||    
T  17370924 catgttcccgatgattgagatggttgcaacgttgttgaggtcgcctgaagatattctcaagagtttgatt 17370993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 665
Target Start/End: Original strand, 29787760 - 29787829
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacat 665  Q
    ||||||||||||| ||||||||||  ||||  ||||| ||| |||| |||||| ||||||||||||||||    
T  29787760 gaagtgtcttatatttagtgtaaaaatttgttagtctttttgaaaactcaaaataatgaagagaacacat 29787829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 660
Target Start/End: Original strand, 29634443 - 29634503
Alignment:
Q  601 tgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaa 660  Q
    ||||||||||||||||||||  ||||  ||||| |||||||| |||||| |||||||||||    
T  29634443 tgtcttatacttagtgtaaaaatttggtagtctctttaaaaactcaaaagaatgaagagaa 29634503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 55390867 - 55390799
Alignment:
Q  430 atgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatt 498  Q
    |||||| ||| ||||||| |||||||| | ||||||| |||  |||||||||||||||  |||||||||    
T  55390867 atgttcgcgaggattgagatggatgctacattgttgatatcacctgaagatattctcaaaagtttgatt 55390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 431 - 684
Target Start/End: Original strand, 2739 - 2989
Alignment:
Q  431 tgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattatt 530  Q
    ||||||||  ||| ||||| |||| ||| ||| |||||||||||||||||| ||||| | ||||||||| | |||||||||||   |||||| |||||||    
T  2739 tgttctcggcgatcgagtttgatgtttcattgctgagatcttctgaagataatctcaagggtttgatttaaccagatgaagat---taagttgtattatt 2835  T
Q  531 atgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaag 630  Q
    ||||| |||| ||| ||||||||| |||| |||||||||| |||||||||| || ||  |  ||| | | ||||||||||||||||| || ||||||  |    
T  2836 atgttatgtcattattttgttggattttaatttaattcttgttagtttgctgaagatgtttgcattgca-tgtcttatacttagtgttaaagtttgccgg 2934  T
Q  631 tctgtttaaaaattc-aaaaaatgaagagaacacattttgtattctacctgatga 684  Q
    ||| ||| |||| || ||| |||||||||||||| ||||||| ||||||| ||||    
T  2935 tctcttttaaaactcgaaagaatgaagagaacacgttttgtactctacctaatga 2989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 427 - 673
Target Start/End: Complemental strand, 39899974 - 39899740
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||||||| |||   |||| ||| |||||||||||||| |||| ||||||||||||  ||||||||| |   ||||||||||||||| |||        
T  39899974 aacatgttctcgacgatcatgttgaatgtttcgttgttgagattttcttaagatattctcaaaagtttgattcggctagatgaagatgtttaggtt---- 39899879  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttg 626  Q
             ||||||||| ||||||||| ||||||||||||||| |||||||  | || ||  ||| || ||||||| |||||||||||||||| |||||    
T  39899878 ---------gtgtccttattttgttggattttagtttaattcttgttagtttattgaagatgttgatattgaagtgttttatacttagtgtaaaggtttg 39899788  T
Q  627 caagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtatt 673  Q
    ||||||| ||| |||| |||||| ||||||||||||||||||||||||    
T  39899787 caagtctctttgaaaactcaaaagaatgaagagaacacattttgtatt 39899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 427 - 660
Target Start/End: Original strand, 26793430 - 26793664
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||| ||| ||| ||| ||||| || | ||| |||||||  | ||||||||||||| |||||||||| |  || ||||||||||||| ||  |||    
T  26793430 aacatgttcccgaggatcgagatggattctacattgctgagatcgccagaagatattctcaagagtttgattcggccaaatgaagatgtttatgtagtat 26793529  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttg 626  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||| || ||   |  || | |||||||||||||||  ||||| |||||    
T  26793530 tattatgttgtgtcattattttgttggattttagtttaattcttgttagtttgctgaagatgtcggtattgcagtgtcttatacttaacgtaaaggtttg 26793629  T
Q  627 caagtctgtttaaaaattca-aaaaatgaagagaa 660  Q
    ||||||| ||| ||| |||| || |||||||||||    
T  26793630 caagtctctttcaaagttcacaagaatgaagagaa 26793664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 525 - 664
Target Start/End: Complemental strand, 19262404 - 19262263
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    |||||||||| ||||| ||| ||||||||| |||| ||||||||||| ||||||||||||| ||  ||  || |||||||||||||||||| ||||| ||    
T  19262404 attattatgtagtgtctttattttgttggaatttaagtttaattcttgttagtttgctaaagatgttggtattgaagtgtcttatacttagggtaaaggt 19262305  T
Q  624 ttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    |||||||| ||||| |||| |||||| |||||||||||||||    
T  19262304 ttgcaagtttgtttgaaaactcaaaagaatgaagagaacaca 19262263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 449 - 665
Target Start/End: Original strand, 27799802 - 27800020
Alignment:
Q  449 tggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtcctta-ctt 547  Q
    |||||||| ||||| ||  |||| ||||||||||||||| |||||||||| | | ||||||||| ||||  ||  ||||||||| |||| || |||  ||    
T  27799802 tggatgctacgttgctggaatctcctgaagatattctcaagagtttgattcggttagatgaagaagtttgggtagtattattattttgtctcattatttt 27799901  T
Q  548 tgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattca- 646  Q
    ||||||| ||||||||||||||| |||||||| | || ||   | ||| ||||||||||||||||| |||||| |||||||||||| ||  |||| |||     
T  27799902 tgttggattttagtttaattcttgttagtttgttgaagatgtcggcattgaagtgtcttatacttattgtaaaggtttgcaagtctattgcaaaactcac 27800001  T
Q  647 aaaaatgaagagaacacat 665  Q
    || ||||||||||| ||||    
T  27800002 aagaatgaagagaatacat 27800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 36321409 - 36321491
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    ||||||||||||| |||||||||| ||||| || ||| ||| | || |||||| ||| |||||||||||||||||||| ||||    
T  36321409 gaagtgtcttatatttagtgtaaaagtttgtaaatctctttgataactcaaaagaataaagagaacacattttgtattatacc 36321491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 678
Target Start/End: Original strand, 39899416 - 39899503
Alignment:
Q  592 acatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    |||| ||||| ||||||||| ||||||||  ||||||||||| | | ||||||||||| ||  |||  ||||||||||||||||||||    
T  39899416 acattgaagtatcttatactaagtgtaaaaatttgcaagtctttgtgaaaattcaaaagaagtaaggaaacacattttgtattctacc 39899503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 664
Target Start/End: Complemental strand, 48706873 - 48706754
Alignment:
Q  546 tttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaatt 644  Q
    ||||||||| |||| ||||||||||| |||||||| | || ||  || ||  |||||||||||||||||||||| |  ||| ||||  | ||| |||| |    
T  48706873 tttgttggaatttaagtttaattcttgttagtttgttgaatatgttggcaatgaagtgtcttatacttagtgtagagatttccaagattctttgaaaagt 48706774  T
Q  645 caaaaaatgaagagaacaca 664  Q
    |||| |||||||||||||||    
T  48706773 caaataatgaagagaacaca 48706754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 660
Target Start/End: Complemental strand, 27800349 - 27800288
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaa 660  Q
    ||||||||||||||||||| |||   ||||||||||| ||| ||||||||||| |||||||||||    
T  27800349 gaagtgtcttatacttagtataa---tttgcaagtctctttcaaaattcaaaagaatgaagagaa 27800288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 649
Target Start/End: Complemental strand, 21760379 - 21760254
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    |||||||||| ||||| ||| ||| ||||| |||| |||||||||||||||||||| | || ||  ||  || ||||||||||||| | | ||||||  |    
T  21760379 attattatgtagtgtctttattttattggaatttaagtttaattcttattagtttgttgaagatgttggtattgaagtgtcttatattgaatgtaaagat 21760280  T
Q  624 ttgcaagtctgtttaaaaattcaaaa 649  Q
    ||||||| || ||| |||| ||||||    
T  21760279 ttgcaagcctctttgaaaagtcaaaa 21760254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 48706970 - 48706930
Alignment:
Q  458 cgttgttgagatcttctgaagatattctcaggagtttgatt 498  Q
    ||||| ||||||| |||||||||||||||| ||||||||||    
T  48706970 cgttgctgagatcgtctgaagatattctcaagagtttgatt 48706930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 429 - 678
Target Start/End: Original strand, 1143 - 1388
Alignment:
Q  429 catgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatc-agatgaagatgtttaagttctatt 527  Q
    ||||||||||| ||| |||||||||| || || | |||||||||||||||||||||||| |||||||||| |  | |||||||||||||||     ||||    
T  1143 catgttctcgacgatcgagttggatgttttgtagctgagatcttctgaagatattctcaagagtttgattcgggctagatgaagatgtttagaaagtatt 1242  T
Q  528 attatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgc 627  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| |||||||| | ||  |  |  ||| ||||||||||||||||      || ||||||    
T  1243 attatgttgtgtcattattttgttggattttagtttaattcttgttagtttgttgaagttgctagcattgaagtgtcttatactt------aacgtttgc 1336  T
Q  628 aagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    |||||| ||| | || |||||| ||||||| ||||| | |||||||||||||    
T  1337 aagtctctttgataaatcaaaagaatgaagggaacataatttgtattctacc 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 429 - 580
Target Start/End: Original strand, 28008887 - 28009038
Alignment:
Q  429 catgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctatta 528  Q
    ||||||||||| ||| ||||| |||| || |||| |||||||||||||||||| ||||| ||||||| ||||  |||||||||||||||| ||| |||||    
T  28008887 catgttctcgacgatcgagtttgatgttttgttgctgagatcttctgaagatactctcaagagtttgctttggccagatgaagatgtttaggttgtatta 28008986  T
Q  529 ttatgttgtgtccttactttgttggactttagtttaattcttattagtttgc 580  Q
      |||||||||| ||| ||| ||||| ||||| ||||||||| |||||||||    
T  28008987 aaatgttgtgtcattattttattggattttagcttaattcttgttagtttgc 28009038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 505 - 671
Target Start/End: Complemental strand, 16651354 - 16651188
Alignment:
Q  505 gatgaagatgtttaagttctattattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtc 604  Q
    |||||||||||||| ||| ||||||||||||||||| ||| ||||||| |  |||||||||||  | |||||||||| || ||  || ||| ||| ||||    
T  16651354 gatgaagatgtttaggttgtattattatgttgtgtcattattttgttgtaacttagtttaatt-atgttagtttgctgaagatgttggcattgaactgtc 16651256  T
Q  605 ttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgta 671  Q
    |||||||||||||||| |||||||||||| ||| | || |||||| |||||| | |||||||||||||    
T  16651255 ttatacttagtgtaaaggtttgcaagtctctttgataactcaaaagaatgaatataacacattttgta 16651188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 505 - 671
Target Start/End: Complemental strand, 17625714 - 17625548
Alignment:
Q  505 gatgaagatgtttaagttctattattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtc 604  Q
    |||||||||||||| ||| ||||||||||||||||| ||| ||||||| |  |||||||||||  | |||||||||| || ||  || ||| ||| ||||    
T  17625714 gatgaagatgtttaggttgtattattatgttgtgtcattattttgttgtaacttagtttaatt-atgttagtttgctgaagatgttggcattgaactgtc 17625616  T
Q  605 ttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgta 671  Q
    |||||||||||||||| |||||||||||| ||| | || |||||| |||||| | |||||||||||||    
T  17625615 ttatacttagtgtaaaggtttgcaagtctctttgataactcaaaagaatgaatataacacattttgta 17625548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 449 - 562
Target Start/End: Complemental strand, 13304317 - 13304207
Alignment:
Q  449 tggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtccttacttt 548  Q
    |||||||||||||| |||||||  ||||||||||| ||| |||||||||| |  |||||||||||||||| |   || ||||||||||| || ||| |||    
T  13304317 tggatgcttcgttgatgagatcgcctgaagatattatcaagagtttgattcggccagatgaagatgtttagg---tagtattatgttgtatcattatttt 13304221  T
Q  549 gttggactttagtt 562  Q
    |||||| |||||||    
T  13304220 gttggattttagtt 13304207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 664
Target Start/End: Original strand, 12083148 - 12083289
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    |||||||||| ||||| ||| |||||| || |||| ||||||||||| || |||| || || ||  ||  || |||||||| ||||||||| ||||||||    
T  12083148 attattatgtagtgtctttattttgttcgaatttaagtttaattcttgtttgttttctgaagatgttggtattgaagtgtcgtatacttagggtaaatgt 12083247  T
Q  624 ttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    || ||||||||||| ||||  ||||| |||||||||||||||    
T  12083248 tttcaagtctgtttgaaaacccaaaagaatgaagagaacaca 12083289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 664
Target Start/End: Complemental strand, 16886420 - 16886352
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||| |||||| ||| |||||||||||    
T  16886420 gaagtgtcttatacttagggtaaaggtttgcaagtctgtttgaaaactcaaaagaataaagagaacaca 16886352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 678
Target Start/End: Complemental strand, 44110375 - 44110145
Alignment:
Q  448 ttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatca-gatgaagatgtttaagttctattattatgttgtgtccttact 546  Q
    ||||||| ||||||| |  ||||||||| | ||||||||| |||||||||| |  || |||||| ||||||| |   ||||||||||||||||| ||  |    
T  44110375 ttggatgtttcgttgctaggatcttctggaaatattctcacgagtttgattcggccaagatgaaaatgtttaggccgtattattatgttgtgtcgttgtt 44110276  T
Q  547 ttgttggactttagtttaattcttattagtttgctaaaaat-aatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattc 645  Q
    ||||||||  ||||||||||| || ||| | |||| || ||  ||| | | ||||||||||| |||||||||||| |||||||||| | ||| | || ||    
T  44110275 ttgttggatcttagtttaattgttgttactctgctgaagatgtatg-cgttgaagtgtcttacacttagtgtaaaggtttgcaagtatctttgataactc 44110177  T
Q  646 aaaaaatgaagagaacacattttgtattctacc 678  Q
      | |||||||| |||||||| |||||||||||    
T  44110176 -gagaatgaagaaaacacattatgtattctacc 44110145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 674
Target Start/End: Original strand, 36337965 - 36338042
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattc 674  Q
    |||||||||||||||||||||||  |||| || ||| ||| |||| |||||| ||||||| |||||||||||||||||    
T  36337965 aagtgtcttatacttagtgtaaaaatttgtaactctctttgaaaactcaaaagaatgaagtgaacacattttgtattc 36338042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 678
Target Start/End: Original strand, 44109844 - 44109924
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaaaatgaagagaacacattttgtattctacc 678  Q
    |||||| |||||| || ||||||  || |||||||| | | |||| | |||||||||||||||||||||||||||||||||    
T  44109844 aagtgttttatacctaatgtaaaaattcgcaagtctctctgaaaactgaaaaaatgaagagaacacattttgtattctacc 44109924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 676
Target Start/End: Original strand, 1319249 - 1319327
Alignment:
Q  599 agtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattcta 676  Q
    ||||||||||||||||||||||  || |||||| | ||| | || |||||| |||||||| ||||||||||||||||||    
T  1319249 agtgtcttatacttagtgtaaaaattagcaagtttctttgataactcaaaagaatgaagaaaacacattttgtattcta 1319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 12083748 - 12083682
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaaca 662  Q
    |||||||| ||||||| |||||||  ||||||||||||||| |||| |||||| |||||||||||||    
T  12083748 gaagtgtcgtatactttgtgtaaaaatttgcaagtctgtttgaaaactcaaaagaatgaagagaaca 12083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 29656588 - 29656499
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtt 516  Q
    |||||||| |||| ||| |||||||||| |||||| ||||||||| || ||||||||   | ||||||||||||  || |||||||||||    
T  29656588 aacatgttgtcgacgatcgagttggatgtttcgttattgagatctactaaagatatttcgaagagtttgatttggccaaatgaagatgtt 29656499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 23553538 - 23553598
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctca 487  Q
    |||||||| |||| ||||||| ||||| || |||||||||||||  |||||||||||||||    
T  23553538 aacatgttttcgaggattgagatggatactacgttgttgagatcacctgaagatattctca 23553598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 620
Target Start/End: Complemental strand, 12678405 - 12678370
Alignment:
Q  585 aataatgacatggaagtgtcttatacttagtgtaaa 620  Q
    |||| |||||||||||||||||||||||||||||||    
T  12678405 aatattgacatggaagtgtcttatacttagtgtaaa 12678370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 649
Target Start/End: Complemental strand, 23554071 - 23554020
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa 649  Q
    |||||||||||||||||||||||  ||||||||| ||||| |||| ||||||    
T  23554071 aagtgtcttatacttagtgtaaaaatttgcaagtgtgtttgaaaactcaaaa 23554020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 642
Target Start/End: Complemental strand, 1321633 - 1321515
Alignment:
Q  524 tattattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    ||||||||||||||||| ||| ||||||||| || |||||||||| |  ||||||||| ||  |  |  |||  |||||| |||||||||||||||| ||    
T  1321633 tattattatgttgtgtcgttattttgttggaattaagtttaattcatggtagtttgctgaaggtgtttgcattaaagtgttttatacttagtgtaaaggt 1321534  T
Q  624 ttgcaagtctgtttaaaaa 642  Q
    ||  |||||| ||| ||||    
T  1321533 tttgaagtctctttgaaaa 1321515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 678
Target Start/End: Complemental strand, 13304180 - 13304102
Alignment:
Q  601 tgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    |||||||||||||| ||||| |||||  ||||| ||| |||| |||||| |||||||| || | |||||||||||||||    
T  13304180 tgtcttatacttagcgtaaaggtttggtagtctctttgaaaagtcaaaagaatgaagaaaagatattttgtattctacc 13304102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 668
Target Start/End: Original strand, 16650962 - 16651035
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaa--ttcaaaaaatgaagagaacacatttt 668  Q
    |||||||||||||| |||||||||  ||||||||||| ||| ||||  |  |||||||||||||||||| ||||    
T  16650962 gaagtgtcttatacatagtgtaaaaatttgcaagtctctttgaaaacttaaaaaaaatgaagagaacacttttt 16651035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 668
Target Start/End: Original strand, 17625322 - 17625395
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaa--ttcaaaaaatgaagagaacacatttt 668  Q
    |||||||||||||| |||||||||  ||||||||||| ||| ||||  |  |||||||||||||||||| ||||    
T  17625322 gaagtgtcttatacatagtgtaaaaatttgcaagtctctttgaaaacttaaaaaaaatgaagagaacacttttt 17625395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Original strand, 26926619 - 26926688
Alignment:
Q  429 catgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatt 498  Q
    |||||||| || ||||||| |||| ||| | ||| |||||||  ||||||||||||||| ||||||||||    
T  26926619 catgttcttgaggattgagatggaagctgcattgatgagatcgcctgaagatattctcaagagtttgatt 26926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 664
Target Start/End: Original strand, 31267293 - 31267433
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    |||||||||| ||||| ||| ||||| ||| |||| |||||||||||  ||||||||| || || |||  || ||||| ||||||||| | ||||    |    
T  31267293 attattatgtagtgtctttattttgtgggaatttaagtttaattcttgatagtttgctgaagatgatggtattgaagtttcttatactgattgtagtgat 31267392  T
Q  624 ttgcaagtctgtttaaaaattcaaaaaatgaagagaacaca 664  Q
    ||||||| || ||| |||| |||||| || |||||||||||    
T  31267393 ttgcaagcctctttgaaaagtcaaaagattaagagaacaca 31267433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 473 - 678
Target Start/End: Complemental strand, 12785222 - 12785015
Alignment:
Q  473 ctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtccttactttgttggactttagtttaattcttat 572  Q
    |||||||||||  || |||||||||| ||  ||||||||||||||| ||  ||||||||||| ||||  ||| ||||||||| || |||||||||| |      
T  12785222 ctgaagatattaacaagagtttgattcgactagatgaagatgtttaggtaatattattatgtagtgtgtttattttgttggaattaagtttaattcatga 12785123  T
Q  573 tagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa--aatgaagagaacacattttgt 670  Q
    ||||||| | |||||  || ||| ||||||| |||||||||||||||| |||||||||||| ||| |||| ||||||  ||||||||||| |||   |||    
T  12785122 tagtttgatgaaaatgttggcattgaagtgtgttatacttagtgtaaaggtttgcaagtctctttcaaaactcaaaaggaatgaagagaatacaacatgt 12785023  T
Q  671 attctacc 678  Q
    ||||||||    
T  12785022 attctacc 12785015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 427 - 581
Target Start/End: Complemental strand, 22843404 - 22843252
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||  ||| ||| ||| ||||||||| ||| ||||||||  |||||| |||||||| |||||||||| |  |||| ||||||||||| ||  |||    
T  22843404 aacatgtttccgacgatcgagatggatgctttgtttttgagatcgcctgaagttattctcaagagtttgattcggccagacgaagatgtttaggtagtat 22843305  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgct 581  Q
    || ||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||    
T  22843304 ta-tatgttgtgtcattattttgttgga-tttagtttaattcttcttagtttgct 22843252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 528
Target Start/End: Complemental strand, 32108989 - 32108890
Alignment:
Q  429 catgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctatta 528  Q
    ||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||| || |||||||||| |  |||||||| ||||||| ||| |||||    
T  32108989 catgttctcgacgatcgagttggatgtttcgttgctgagatcttctgaagatattcgcaagagtttgattcggacagatgaaaatgtttaggttgtatta 32108890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 598 - 673
Target Start/End: Original strand, 32108414 - 32108489
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaaaatgaagagaacacattttgtatt 673  Q
    |||||| ||||||||||||||||  ||||||||||| ||| ||| || ||| ||||||| ||||||||||||||||    
T  32108414 aagtgttttatacttagtgtaaaaatttgcaagtctctttgaaacttaaaagaatgaagtgaacacattttgtatt 32108489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 662
Target Start/End: Original strand, 12784699 - 12784763
Alignment:
Q  599 agtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaaca 662  Q
    |||||||||||||| |||||||  ||||||||||| ||| |||| |||||| |||||||||||||    
T  12784699 agtgtcttatacttggtgtaaaaatttgcaagtctttttcaaaactcaaaagaatgaagagaaca 12784763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 678
Target Start/End: Complemental strand, 32108811 - 32108729
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattc-aaaaaatgaagagaacacattttgtattctacc 678  Q
    ||||||||||||||||||||||||  ||| ||||||| ||| |||| || ||| |||| | | ||||||| ||||||||||||    
T  32108811 gaagtgtcttatacttagtgtaaagttttacaagtctctttgaaaactcgaaagaatggataaaacacatgttgtattctacc 32108729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 12504744 - 12504688
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgc 580  Q
    |||||||||| ||||| ||| ||||||||| |||| ||||||||||| |||||||||    
T  12504744 attattatgtagtgtctttattttgttggaatttaagtttaattcttgttagtttgc 12504688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 664
Target Start/End: Original strand, 26140369 - 26140509
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    ||||||||||  |||  ||| ||||||||| |||| ||||||||||| ||||||| || || ||  || ||| ||| |||||||||||||||||| |  |    
T  26140369 attattatgtattgtatttattttgttggaatttatgtttaattcttgttagtttactgaatatgttggcattgaaatgtcttatacttagtgtagagtt 26140468  T
Q  624 ttgcaagtctgtttaaaaattcaaaaaatgaagagaacaca 664  Q
    ||| |||  | ||| |||| ||||  |||||||||||||||    
T  26140469 ttgtaagattctttgaaaagtcaatgaatgaagagaacaca 26140509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 650 - 678
Target Start/End: Complemental strand, 29370632 - 29370604
Alignment:
Q  650 aatgaagagaacacattttgtattctacc 678  Q
    |||||||||||||||||||||||||||||    
T  29370632 aatgaagagaacacattttgtattctacc 29370604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 427 - 664
Target Start/End: Complemental strand, 7576189 - 7575951
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||||||| ||| ||| || || |||||||  | |||||  || |||||||||||| |||||| ||| |  || ||||||||||||| ||  |||    
T  7576189 aacatgttctcgacgatcgagatgtatacttcgttacttagatcacctaaagatattctcaagagtttaattcggccatatgaagatgtttaggtagtat 7576090  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttg 626  Q
    |||||||  | ||| ||| ||||||||| || |||||||||  |  ||||||| | | |||| |||||| ||||||| |||||||||||||||| |||||    
T  7576089 tattatgcagcgtctttattttgttggaattaagtttaatttgtggtagtttgttgacaatattgacattgaagtgtgttatacttagtgtaaaggtttg 7575990  T
Q  627 caagtctgtttaaaaattca-aaaaatgaagagaacaca 664  Q
    ||||||| ||| |||| ||| || |||||||||||||||    
T  7575989 caagtctctttcaaaactcacaagaatgaagagaacaca 7575951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 527 - 673
Target Start/End: Complemental strand, 26604597 - 26604450
Alignment:
Q  527 tattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttg 626  Q
    |||||||||||||| ||| ||| ||| | ||||||||| ||||| |||||||||| || ||  |  ||  |||||||||||||||||||||||  |||||    
T  26604597 tattatgttgtgtcattatttttttgaattttagtttagttcttgttagtttgctgaagatgtttgcaatgaagtgtcttatacttagtgtaatggtttg 26604498  T
Q  627 caagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtatt 673  Q
     |||||| ||| |||| |||||| ||||||||||||||||||||||||    
T  26604497 taagtctctttgaaaactcaaaagaatgaagagaacacattttgtatt 26604450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 26604124 - 26604206
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    ||||||||||||||||| ||||||  ||||||||||| ||| |||| |||||| ||| |||||||||||||||||||||||||    
T  26604124 gaagtgtcttatacttaatgtaaaaatttgcaagtctctttgaaaactcaaaacaattaagagaacacattttgtattctacc 26604206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 525 - 649
Target Start/End: Original strand, 19748281 - 19748406
Alignment:
Q  525 attattatgttgtgtccttactttgttggactttag-tttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    ||||||||||  |||| ||| ||||||||| ||||  |||||||||| |||||||||| || ||  ||  || |||||||||||||||||| ||||| ||    
T  19748281 attattatgtattgtctttattttgttggaatttaactttaattcttgttagtttgctgaagatgttggtattgaagtgtcttatacttagggtaaaggt 19748380  T
Q  624 ttgcaagtctgtttaaaaattcaaaa 649  Q
    ||||||||||||| ||||| ||||||    
T  19748381 ttgcaagtctgttcaaaaactcaaaa 19748406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 427 - 568
Target Start/End: Original strand, 37396826 - 37396967
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctat 526  Q
    ||||||||| | | ||| ||| |||||||| ||||| |||||||  ||||||||||||||| |||||||||| |   |||| |||||||||| ||  |||    
T  37396826 aacatgttcccaacgatcgagatggatgctacgttgctgagatcacctgaagatattctcaagagtttgattcggctagataaagatgtttaggtagtat 37396925  T
Q  527 tattatgttgtgtccttactttgttggactttagtttaattc 568  Q
    |||||||| ||||| ||| || |||||| || ||||||||||    
T  37396926 tattatgtagtgtctttatttggttggaattaagtttaattc 37396967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 536 - 664
Target Start/End: Complemental strand, 25360458 - 25360328
Alignment:
Q  536 gtgtccttactttgttggactttagtttaa-ttcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctg 634  Q
    ||||||||| | ||||||| ||||  |||| ||||| |||||||||| || ||  ||  || |||||||||||||| ||| ||||| |||||||||||||    
T  25360458 gtgtccttattctgttggaatttaaattaaattcttgttagtttgctgaagatgttggtattgaagtgtcttatacatagggtaaaagtttgcaagtctg 25360359  T
Q  635 tttaaaaattcaaaa-aatgaagagaacaca 664  Q
    ||| |||| |||||| |||||||||||||||    
T  25360358 tttgaaaactcaaaagaatgaagagaacaca 25360328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 598 - 664
Target Start/End: Complemental strand, 16418019 - 16417952
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    |||||||||||| |||||||||| |||||||||||| ||| |||| |||||| |||||||||||||||    
T  16418019 aagtgtcttatagttagtgtaaaagtttgcaagtctctttgaaaactcaaaagaatgaagagaacaca 16417952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 19748654 - 19748588
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaaca 662  Q
    |||||||| |||||||||||||||  ||||||||||||||| |||| |||||| |||||||||||||    
T  19748654 gaagtgtcgtatacttagtgtaaaaatttgcaagtctgtttgaaaactcaaaagaatgaagagaaca 19748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 662
Target Start/End: Original strand, 25360095 - 25360161
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaaca 662  Q
    |||||||| |||| ||||||||||  ||||||||||||||| ||||||||||| |||||||||||||    
T  25360095 gaagtgtcgtatatttagtgtaaaaatttgcaagtctgtttgaaaattcaaaacaatgaagagaaca 25360161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 664
Target Start/End: Original strand, 16417623 - 16417687
Alignment:
Q  601 tgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    ||||||||||||||||||||  |||||||| || |||||||| |||||| |||||||||||||||    
T  16417623 tgtcttatacttagtgtaaaaatttgcaagcctctttaaaaactcaaaagaatgaagagaacaca 16417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 674
Target Start/End: Complemental strand, 11477892 - 11477742
Alignment:
Q  524 tattattatgttgtgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    ||||||||||||||||  ||| ||||||||| || |||| ||||| |  ||||||||| | |||  || ||| ||| |||| ||||||||||||||| ||    
T  11477892 tattattatgttgtgtt-ttattttgttggaattaagttgaattcatggtagtttgctgagaatgttggcattgaattgtcatatacttagtgtaaaggt 11477794  T
Q  624 ttgcaagtctgtttaaaaattc-aaaaaatgaagagaacacattttgtattc 674  Q
    ||||||||||  || |||| || ||| |||  ||||||||||| ||||||||    
T  11477793 ttgcaagtctccttgaaaactcgaaagaattgagagaacacatgttgtattc 11477742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 665
Target Start/End: Original strand, 11477419 - 11477488
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacat 665  Q
    ||||||| ||||||||||||||||  ||||| ||||| ||| |||| |||||| ||||||||||||||||    
T  11477419 gaagtgtgttatacttagtgtaaaaatttgccagtctctttgaaaactcaaaagaatgaagagaacacat 11477488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 673
Target Start/End: Complemental strand, 19575820 - 19575749
Alignment:
Q  603 tcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtatt 673  Q
    |||||||||| |||||||   |||||||||| | | |||| |||||| ||||||||||||||||||||||||    
T  19575820 tcttatacttggtgtaaaaaattgcaagtctctatgaaaactcaaaataatgaagagaacacattttgtatt 19575749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 663
Target Start/End: Complemental strand, 37397394 - 37397327
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacac 663  Q
    ||||||||||||||||||| ||||  ||||||||||| ||| |||| |||||| ||| ||||||||||    
T  37397394 gaagtgtcttatacttagtttaaaaatttgcaagtctctttcaaaactcaaaagaataaagagaacac 37397327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 16418194 - 16418125
Alignment:
Q  427 aacatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttga 496  Q
    ||||||||| ||| ||||||| |||||| | | ||| |||||||  ||||||||||||||| ||||||||    
T  16418194 aacatgttcccgaggattgagatggatgttacattgctgagatcacctgaagatattctcaagagtttga 16418125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 445 - 676
Target Start/End: Original strand, 37059025 - 37059253
Alignment:
Q  445 gagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtcctta 544  Q
    ||||||||||  |||||  ||||| ||| |||||||||||||| |||||||||| |  ||||| |||||   || ||| ||| ||||||||||||| |||    
T  37059025 gagttggatgtctcgttaatgagaccttatgaagatattctcaagagtttgattcggccagataaagat---taggttgtatcattatgttgtgtcatta 37059121  T
Q  545 ctttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaatt 644  Q
     ||||||||| |||| |||||||||| || ||||| | |||||  |  |||  ||||||||||||||||||||||  |||||  | ||| ||| |||| |    
T  37059122 ttttgttggattttaatttaattcttgtttgtttggtgaaaatgttaccattaaagtgtcttatacttagtgtaacggtttgtcaatct-tttgaaaact 37059220  T
Q  645 caaaaa-atgaagagaacacattttgtattcta 676  Q
    |||||| ||||||||||||||||||| ||||||    
T  37059221 caaaaagatgaagagaacacattttgaattcta 37059253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 449 - 581
Target Start/End: Complemental strand, 5306536 - 5306404
Alignment:
Q  449 tggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtccttacttt 548  Q
    |||||||| | ||||||||| || ||||||||||||||| |||||||| | |  |||| ||||||||||| ||  ||||||||||||||||| ||| |||    
T  5306536 tggatgctacattgttgagacctcctgaagatattctcaagagtttgactcggccagacgaagatgtttaggtagtattattatgttgtgtcattatttt 5306437  T
Q  549 gttggactttagtttaattcttattagtttgct 581  Q
     ||||| ||||||||||||||| | ||||||||    
T  5306436 attggattttagtttaattcttgtaagtttgct 5306404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 546 - 664
Target Start/End: Original strand, 11718995 - 11719115
Alignment:
Q  546 tttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaatt 644  Q
    ||||||||| |||| ||||||||||| |||||||||| || ||  ||  || |||||||||||||||||| ||||| |||||||||||||||| |||| |    
T  11718995 tttgttggaatttaagtttaattcttgttagtttgctgaagatgttgggattgaagtgtcttatacttagggtaaaggtttgcaagtctgtttcaaaact 11719094  T
Q  645 caaaa-aatgaagagaacaca 664  Q
    ||||| |||||||||||||||    
T  11719095 caaaagaatgaagagaacaca 11719115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 20529277 - 20529359
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    ||||||||||||||||||||||||  ||| ||||||| ||| |||| |||||| |||| ||||||||||||||||||||||||    
T  20529277 gaagtgtcttatacttagtgtaaaaatttacaagtctctttgaaaactcaaaataatgtagagaacacattttgtattctacc 20529359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 11719421 - 11719355
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaaca 662  Q
    ||||||||||||| ||||| ||||  ||||||||||||||| |||| |||||| |||||||||||||    
T  11719421 gaagtgtcttatagttagtttaaaaatttgcaagtctgtttgaaaactcaaaagaatgaagagaaca 11719355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 611
Target Start/End: Original strand, 18332775 - 18332862
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatact 611  Q
    |||| ||||| ||||| ||| ||||||||| |||| |||||||||||||||||||||  || ||  ||| || |||||||||||||||    
T  18332775 attactatgtagtgtctttattttgttggaatttaagtttaattcttattagtttgcggaagatgttgatattgaagtgtcttatact 18332862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 23282593 - 23282655
Alignment:
Q  603 tcttatacttagtgtaaatgtttgcaagtctgtttaaaaattca-aaaaatgaagagaacaca 664  Q
    |||||||||||| ||||| |||||||||||| ||| |||| ||| || |||||||||||||||    
T  23282593 tcttatacttagcgtaaaggtttgcaagtctctttgaaaactcacaagaatgaagagaacaca 23282655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 664
Target Start/End: Complemental strand, 28746951 - 28746811
Alignment:
Q  525 attattatgttgtgtccttactttgttggactttag--tttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatg 622  Q
    |||||||||| ||||| ||| ||||||||| ||||   |||||||||| |||||||||| || ||  ||  || |||||||| ||||||||| |||||      
T  28746951 attattatgtggtgtctttattttgttggattttaagttttaattcttgttagtttgctgaagatgttggtattgaagtgtcatatacttagggtaaaga 28746852  T
Q  623 tttgcaagtctgtttaaaaattcaaaaaatgaagagaacaca 664  Q
    ||||||  | | ||| |||| ||||| |||||||||||||||    
T  28746851 tttgcagat-tctttgaaaagtcaaagaatgaagagaacaca 28746811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 664
Target Start/End: Original strand, 18878758 - 18878863
Alignment:
Q  559 agtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaaaatgaagag 658  Q
    |||||||||||| |||||||||| || ||  ||  || ||||||||||||||| | ||||    |||||||| || |||||||| |||||| || |||||    
T  18878758 agtttaattcttgttagtttgctgaagatgttggtattgaagtgtcttatactgaatgtagtgatttgcaagcctctttaaaaagtcaaaatattaagag 18878857  T
Q  659 aacaca 664  Q
    ||||||    
T  18878858 aacaca 18878863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 664
Target Start/End: Original strand, 5305176 - 5305244
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    |||||||||||||||||| |||||  ||||||| ||| ||| |||| |||||| |||||||| ||||||    
T  5305176 gaagtgtcttatacttagcgtaaaaatttgcaactctctttgaaaactcaaaagaatgaagaaaacaca 5305244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 449 - 584
Target Start/End: Complemental strand, 23608018 - 23607883
Alignment:
Q  449 tggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatttgatcagatgaagatgtttaagttctattattatgttgtgtccttacttt 548  Q
    ||||||||||||||  ||||||  ||||||||||||||| |||||||||||   |||||||||| |||||  |  |||||||||||  |||| ||  |||    
T  23608018 tggatgcttcgttgcagagatcacctgaagatattctcaagagtttgatttagccagatgaagaagtttagatagtattattatgtaatgtcgttctttt 23607919  T
Q  549 gttggactttagtttaattcttattagtttgctaaa 584  Q
     ||||| |||||||||||||||||||||||||||||    
T  23607918 attggattttagtttaattcttattagtttgctaaa 23607883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 664
Target Start/End: Original strand, 2402414 - 2402553
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    ||||||||||  |||| || |||||||||| |||| ||||||||||| |||||||||| || ||  ||  || |||||||||||||||||| ||||| ||    
T  2402414 attattatgtattgtctttgctttgttggaatttaagtttaattcttgttagtttgctgaagatgttggtattgaagtgtcttatacttagggtaaaagt 2402513  T
Q  624 ttgcaagtctgtttaaaaattcaaaaaatgaagagaacaca 664  Q
     ||||||||||||| |||| || || |||||||||||||||    
T  2402514 ctgcaagtctgtttgaaaactc-aagaatgaagagaacaca 2402553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 583 - 678
Target Start/End: Complemental strand, 3386365 - 3386269
Alignment:
Q  583 aaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    |||||| || ||| ||||||||||||| ||||||||||  ||||||||||| ||| |||| |||||| |||||||| ||||||||||||||||||||    
T  3386365 aaaatattgtcattgaagtgtcttatatttagtgtaaaaatttgcaagtctctttgaaaactcaaaagaatgaagataacacattttgtattctacc 3386269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 525 - 664
Target Start/End: Original strand, 24560030 - 24560171
Alignment:
Q  525 attattatgttgtgtccttactttgttggactttag-tttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    |||||||||  ||||| ||| ||||||||| ||||  |||||||||| |||||||||| || ||  ||  || ||||||||||||||||||  |||| ||    
T  24560030 attattatgcagtgtctttattttgttggaatttaaatttaattcttgttagtttgctgaatatgttggtattgaagtgtcttatacttaggataaaggt 24560129  T
Q  624 ttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    |||||||||| ||| |||| |||||| |||||||||||||||    
T  24560130 ttgcaagtctttttcaaaactcaaaagaatgaagagaacaca 24560171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 678
Target Start/End: Original strand, 11117220 - 11117300
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctacc 678  Q
    |||| ||||||||||||||||||  ||||||||||| | | ||||||||||| |||||||| || |||||||||||||||||    
T  11117220 aagtatcttatacttagtgtaaaa-tttgcaagtctctatgaaaattcaaaagaatgaagataatacattttgtattctacc 11117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 677
Target Start/End: Complemental strand, 22962357 - 22962277
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattc-aaaaaatgaagagaacacattttgtattctac 677  Q
    ||||||||||||||||||||||| |||||||||||  ||| |||| || ||| |||| | ||||||||| |||||||||||    
T  22962357 aagtgtcttatacttagtgtaaaggtttgcaagtcgttttgaaaactcgaaagaatggaaagaacacatgttgtattctac 22962277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 677
Target Start/End: Original strand, 23826036 - 23826116
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattc-aaaaaatgaagagaacacattttgtattctac 677  Q
    ||||||||||||||||||||||| |||||||||||  ||| |||| || ||| |||| | ||||||||| |||||||||||    
T  23826036 aagtgtcttatacttagtgtaaaggtttgcaagtcgttttgaaaactcgaaagaatggaaagaacacatgttgtattctac 23826116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 664
Target Start/End: Complemental strand, 24560504 - 24560436
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaa-aaaatgaagagaacaca 664  Q
    ||||||||||||||||||||||||  ||||||||| ||||| |||| |||| | |||||||||||||||    
T  24560504 gaagtgtcttatacttagtgtaaaaatttgcaagtttgttttaaaactcaacagaatgaagagaacaca 24560436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 498
Target Start/End: Original strand, 14095755 - 14095825
Alignment:
Q  428 acatgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatt 498  Q
    |||||||| ||| ||||||| |||| ||||||||| |||||||  ||| ||||||||||| ||||||||||    
T  14095755 acatgttcccgaggattgagatggaagcttcgttgctgagatcgcctgtagatattctcaagagtttgatt 14095825  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 664
Target Start/End: Original strand, 19243009 - 19243150
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    ||||||||||  |||| ||| ||||||||| |||| ||||||| | |   |||||||||| ||| |||  ||  ||||||| ||||||||||||||| ||    
T  19243009 attattatgtattgtctttattttgttggaatttaagtttaatccatggaagtttgctaagaatgatggtattaaagtgtcatatacttagtgtaaaggt 19243108  T
Q  624 ttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    ||||||| || ||| |||| |||||| ||| |||||||||||    
T  19243109 ttgcaagactatttgaaaactcaaaagaataaagagaacaca 19243150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 664
Target Start/End: Complemental strand, 19243478 - 19243415
Alignment:
Q  602 gtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacaca 664  Q
    ||||||||||| |||||||  |||||||| || | ||||||||||||| |||||||||||||||    
T  19243478 gtcttatacttggtgtaaaaatttgcaagactatctaaaaattcaaaagaatgaagagaacaca 19243415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 5973120 - 5973051
Alignment:
Q  429 catgttctcgatgattgagttggatgcttcgttgttgagatcttctgaagatattctcaggagtttgatt 498  Q
    ||||||| ||| ||||||| |||| ||| | ||| |||||||  ||||||||||||||| ||||||||||    
T  5973120 catgttcccgaggattgagatggaagctacattgctgagatcgcctgaagatattctcaagagtttgatt 5973051  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 678
Target Start/End: Original strand, 33200341 - 33200482
Alignment:
Q  537 tgtccttactttgttggactttagtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtt 636  Q
    |||| ||| ||||||||| ||||  |||||||||||||||||||| || ||  ||  || ||||||||||||||| | ||||    |||||||| || |     
T  33200341 tgtctttattttgttggagtttaagttaattcttattagtttgctgaagatgttgctattgaagtgtcttatactgaatgtagcgatttgcaagcctctc 33200440  T
Q  637 taaaaattcaaaaaatgaagagaacacattttgtattctacc 678  Q
    |||||| |||||| || || ||||||||   |||||||||||    
T  33200441 taaaaagtcaaaagattaatagaacacaacatgtattctacc 33200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 664
Target Start/End: Complemental strand, 18743967 - 18743828
Alignment:
Q  525 attattatgttgtgtccttactttgttggacttta-gtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgt 623  Q
    |||||||||| ||||| ||| ||| ||||| |||| ||||||||||| |||||||||| || ||  ||  || ||||||| ||||||||| ||||    |    
T  18743967 attattatgtagtgtctttattttcttggaatttaagtttaattcttgttagtttgctgaagatgttggtattgaagtgttttatacttaatgtagtgat 18743868  T
Q  624 ttgcaagtctgtttaaaaattcaaaaaatgaagagaacaca 664  Q
    ||||||| || ||| |||| |||||| || |||||||||||    
T  18743867 ttgcaagcct-tttgaaaagtcaaaatattaagagaacaca 18743828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 45922 - 46003
Alignment:
Q  597 gaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaacacattttgtattctac 677  Q
    ||||||||||||||||||||||||  ||| ||| ||| ||| |||| |||||| ||||||||||||||||||||||||||||    
T  45922 gaagtgtcttatacttagtgtaaaaatttacaaatctctttgaaaactcaaaagaatgaagagaacacattttgtattctac 46003  T

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Target: scaffold0121 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 559 - 664
Target Start/End: Original strand, 5601 - 5707
Alignment:
Q  559 agtttaattcttattagtttgctaaaaataatgacatggaagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaaga 657  Q
    ||||||||| || ||||||||||||| ||  ||  || |||||||| ||||||||| ||||| |||||||||||||||| |||| |||||| ||||||||    
T  5601 agtttaattgttgttagtttgctaaagatgttggaattgaagtgtcgtatacttagggtaaaggtttgcaagtctgtttgaaaactcaaaagaatgaaga 5700  T
Q  658 gaacaca 664  Q
    || ||||    
T  5701 gagcaca 5707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 661
Target Start/End: Original strand, 22174 - 22238
Alignment:
Q  598 aagtgtcttatacttagtgtaaatgtttgcaagtctgtttaaaaattcaaaa-aatgaagagaac 661  Q
    |||||||||||||||||||||||   || ||||||| ||| |||| |||||| ||||||||||||    
T  22174 aagtgtcttatacttagtgtaaaaaatttcaagtctctttcaaaactcaaaagaatgaagagaac 22238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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