View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_18 (Length: 680)
Name: NF8921_low_18
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 172 - 427
Target Start/End: Original strand, 3077552 - 3077802
Alignment:
| Q |
172 |
taaaaatcttttcattcctcgccttctaaatcacccaaatagttgaatgccgaatgagcctaagacccttaaccaccttcttgttaaaacctccccacgt |
271 |
Q |
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| T |
3077552 |
taaaaatcttttcattcttcgccgtccaaatcacccaaatagttgcatgccaaatgagcctaagacccttaaccactttct----aaaacctccag-cgt |
3077646 |
T |
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| Q |
272 |
tccaacacgcccaatgattaaagacattttgaagcataataaacgagtaatcaacccacttaaacaactccaaccaaacccctctcgctaccgagcaatg |
371 |
Q |
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| T |
3077647 |
tccaacacgcccaatgattaaagacattttgaagcataataaacgagtaattgacccacttaaacaactccaaccaaacccctctcgctaccaagcaatg |
3077746 |
T |
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| Q |
372 |
cacaaagaggtgagttcatttttccgtatcgacttcacacaacgcacaagaaagca |
427 |
Q |
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| T |
3077747 |
cacagagaggtgagttcatttttccgtatcgacttcacacaacgcacaagaaagca |
3077802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 490 - 666
Target Start/End: Original strand, 3077829 - 3078008
Alignment:
| Q |
490 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacacc---ttctcctccacactccaattgttctctgttat |
586 |
Q |
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| T |
3077829 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacaccctcttctcctctacactccaattgttctctattat |
3077928 |
T |
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| Q |
587 |
ccatctatcttccaactttgcatacaatgatttaaccgtaaaaattccatcctcttccatcttccacacccaaacatctg |
666 |
Q |
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| T |
3077929 |
ccatctatcttccaactttgcatacaatgatttaaccgtaaaaatcccatcctcttccatcttccacacccaaacatctg |
3078008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 441 - 544
Target Start/End: Complemental strand, 44692825 - 44692722
Alignment:
| Q |
441 |
agggcattcctcctactaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaa |
540 |
Q |
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| T |
44692825 |
agggcattccttctacgaagattccaccgcgtcggaatacgatcaagcaaaactttccaagaaagggccaccacttttgacggagccgggcttttccaaa |
44692726 |
T |
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| Q |
541 |
gttg |
544 |
Q |
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|||| |
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| T |
44692725 |
gttg |
44692722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 541
Target Start/End: Complemental strand, 15316260 - 15316226
Alignment:
| Q |
507 |
gccaccaccttagacggagccggacttttccaaag |
541 |
Q |
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| T |
15316260 |
gccacaaccttagacggagccggacttttccaaag |
15316226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 456 - 658
Target Start/End: Original strand, 34866382 - 34866587
Alignment:
| Q |
456 |
ctaagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac-- |
553 |
Q |
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| T |
34866382 |
ctaagattcaatcgcgacggaatacgatcaagcaagactttccaagaaagggccaccacttttgagggggccgggcttttccaaagttggagaaacactc |
34866481 |
T |
|
| Q |
554 |
-cttctcctccacactccaattgttctctgttatccatctatcttccaactttgcatacaatgatttaaccgtaaaaattccatcctcttccatcttcca |
652 |
Q |
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| T |
34866482 |
tcaactcctccacactccaattgttctccacaatccatctcccttcaaacttcgcatacatagatttcaccgtgaatttcccttcgtcttccatcctcca |
34866581 |
T |
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| Q |
653 |
caccca |
658 |
Q |
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|||||| |
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| T |
34866582 |
caccca |
34866587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Original strand, 14248764 - 14248813
Alignment:
| Q |
496 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
545 |
Q |
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| T |
14248764 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
14248813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 5008679 - 5008743
Alignment:
| Q |
486 |
agcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
550 |
Q |
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| T |
5008679 |
agcaaaaccttccaagagagtgccaccaccttcaaaggagccggattcttccaaagttgcgtaaa |
5008743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 458 - 550
Target Start/End: Original strand, 47337317 - 47337409
Alignment:
| Q |
458 |
aagattaaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
550 |
Q |
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| T |
47337317 |
aagattcaaacgggtcggtatacgattaagcaaagatctccaagagagcgccaccaccttagaaggagccgggctcttccaaacttggctaaa |
47337409 |
T |
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