View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_21 (Length: 596)
Name: NF8921_low_21
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Complemental strand, 49165825 - 49165262
Alignment:
| Q |
18 |
attcatgacatgaaataaatactactccggttttaagcataatcattagatatatgtatttggttcaaatatcataaatacatattccttactggtctgt |
117 |
Q |
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| T |
49165825 |
attcatgacatgaaataaatactactccggttttaagcataatcattagatatatgtatttggttcaaatatcataaatacatattccttactggtctgt |
49165726 |
T |
|
| Q |
118 |
aaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165725 |
aaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaa |
49165626 |
T |
|
| Q |
218 |
ggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggtttgccaacaaaagtatataatcaatttgcaaataagctatgtctat |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49165625 |
ggagcatggcctagcctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctat |
49165526 |
T |
|
| Q |
318 |
ttgtaaaactacaatagttgcannnnnnnnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgcc |
417 |
Q |
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| T |
49165525 |
ttgtaaaactacaatagttgca--tttttttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgcc |
49165428 |
T |
|
| Q |
418 |
actaaacaacattttgtattaaatagtgtatggtagaacgatcgtgatttgttcaaattcagtcttgacaatactgcttgattcaacttcaacttcccaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49165427 |
actaaacaacattttgtattaaatagtgtatggtagaacaatcgtgatttgttcaaattcagtcttgacaatactgcttgattcaacttcaatttcccaa |
49165328 |
T |
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| Q |
518 |
agggagtcacgacaatgatgttgagatttacctttatatgacataatagttttacttttaacttct |
583 |
Q |
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| T |
49165327 |
agggagtcacgacaatgatgttgagatttacctttatatgacataatagttttacttttaacttct |
49165262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 100 - 319
Target Start/End: Complemental strand, 43752148 - 43751932
Alignment:
| Q |
100 |
tattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttctt |
199 |
Q |
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|||| ||||| ||| ||||||||||| |||||||||| ||| ||||||||||||| ||| |||| || |||||||| |||||||| | ||||||||| |
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| T |
43752148 |
tattgcttaccggtttgtaaacatccgcatgacttgatatcactttgatagtgaaatgtggatttttcagagtggatgcgaattgatctgattctttctt |
43752049 |
T |
|
| Q |
200 |
agcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggtttgccaacaaaagtatataatcaatttg |
299 |
Q |
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| T |
43752048 |
aacttcagaacttttgaaagagcatgaactagcatggagtgaat---tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaattta |
43751952 |
T |
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| Q |
300 |
caaataagctatgtctattt |
319 |
Q |
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| T |
43751951 |
caaataagctacatctattt |
43751932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 43752272 - 43752205
Alignment:
| Q |
21 |
catgacatgaaataaatactactccggttttaagcataatcattagatatat-gtatttggttcaaat |
87 |
Q |
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||||||||||| ||||||||||||| |||| || ||||| ||| ||||| || ||||||||||||||| |
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| T |
43752272 |
catgacatgaattaaatactactccagtttcaaacataaccatgagataaatagtatttggttcaaat |
43752205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 40935228 - 40935179
Alignment:
| Q |
428 |
attttgtattaaatagtgtatggtagaacgatcgtgatttgttcaaattc |
477 |
Q |
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||||||||||||||| ||||| |||||||||| | |||||||||||||| |
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| T |
40935228 |
attttgtattaaataatgtatagtagaacgatagcaatttgttcaaattc |
40935179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 35303966 - 35304014
Alignment:
| Q |
429 |
ttttgtattaaatagtgtatggtagaacgatcgtgatttgttcaaattc |
477 |
Q |
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||||||| |||||||||||||| ||||| || ||||||| ||||||||| |
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| T |
35303966 |
ttttgtactaaatagtgtatgggagaacaatagtgattttttcaaattc |
35304014 |
T |
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