View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8921_low_22 (Length: 583)
Name: NF8921_low_22
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 566
Target Start/End: Original strand, 25940170 - 25940726
Alignment:
| Q |
7 |
ggtagattatactagtatgtttaggattactatcaactatcctaaattgtgtttcttcaaca--agtatgaatgaatgtgataagaagtgtgttaaaatt |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25940170 |
ggtatattatactagtatgtttaggattactatcaactatcctaaattgcgtttcttcaacataagtatgaatgaatgtggtaagaagtgtgttaaaatt |
25940269 |
T |
|
| Q |
105 |
tgaaagactttcttaccaacattattcttatatttaatagaaatgttatttaaattaattcgagttttaaaccattgacgaacaaaattataatttgtgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25940270 |
tgaaagactttcttaccaacattattcttatatttaatagaaatgttatttaaattaattcgagttttaaaccattgacgaacaaatttataatttgtgt |
25940369 |
T |
|
| Q |
205 |
tgtggcagtgggcaaacagcctttgccagggagccagtctaccactttccacgcctctcaaggtacacatatataatatatgttcccgttccttgttatt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25940370 |
tgtggcagtgggcaaacagcctttgccagggagccagtctaccactttccacgcctctcaaggtacacatatataatatatgttcccgttccttgttatt |
25940469 |
T |
|
| Q |
305 |
gcatttcatttttatatgttcctattagtttaacttgaaattttgacattttcatcataattacttctagctttatttaaggtgttgatactcttagctt |
404 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25940470 |
gcatttcatttt--tatgttcctattggtttaact--aaattttgacattttcatcacaattacttctagctttatttaaggtgttgatactcttagctt |
25940565 |
T |
|
| Q |
405 |
cctatggtagccatttgatttgtttcaagttccttaagttcatgctagatagcttaatttgccactctttgaacaacatagaactacagaagttattaaa |
504 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25940566 |
cctatggcagccatttgatttgttttaagttccttaagttcatgctagatagcttaatttgccactctttgaacaacatagaactacagaagttattaaa |
25940665 |
T |
|
| Q |
505 |
tcattgcctagttagagaattcaaattatagttgtaacactgttttaaataacggtcatggt |
566 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25940666 |
tcattgcc-agttagagaattcaaattatagctgtaacactgttttaaataacggtcatggt |
25940726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University