View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_23 (Length: 566)
Name: NF8921_low_23
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 44 - 396
Target Start/End: Complemental strand, 44990702 - 44990358
Alignment:
| Q |
44 |
tcacaactggtgttgatgctttttgatttctgttcgtactaaggaccaaatgtaatagtttaagaattatatttagggacattttctaatgtacttctgg |
143 |
Q |
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| T |
44990702 |
tcacaactggttttgatgctttttgttttcttttcgtaataaggaccaaatgacgtagtttaagaacaatatttagggacattttctaatgtacttatgg |
44990603 |
T |
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| Q |
144 |
gattgttccaaaaacatatacttaaatagttttgttcataatttaaaacttaaatgcaataggttgtttttgagttttgttgttgcatctttgagattcg |
243 |
Q |
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| T |
44990602 |
gattgttccaaaaacgtgtattt--------ttgttcataatttaaaacttaaatgcaataggttgtttttgagttttgttgttgcatctttgagattct |
44990511 |
T |
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| Q |
244 |
ctaagcatcattatgcaacatcaacatttcattgcaatgaaaatgtggatcgagagatctcatgtggttctgattctccatatcaaagtaccgtaacaat |
343 |
Q |
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| T |
44990510 |
ctaagcatcattatgcaacatcaacatttcattgcaatgaaaatgtggatcgagaggtctcatgtggttctgattctccatatcaaagtaccgtaacaat |
44990411 |
T |
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| Q |
344 |
cttccaccaaatacctgccatgtcaataaaagattttataatcgtttgtttct |
396 |
Q |
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| T |
44990410 |
cttccaccaaatacctgccatgtcaataaaagattttataatcgtttgtttct |
44990358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41559411 - 41559458
Alignment:
| Q |
1 |
tattttatgatgtgtacatttgcttaaaacaaataatcgacactcaca |
48 |
Q |
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| T |
41559411 |
tattttatgatgtgtacatttgcataaaacaaattatcgccactcaca |
41559458 |
T |
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