View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_28 (Length: 548)

Name: NF8921_low_28
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_28
NF8921_low_28
[»] chr3 (20 HSPs)
chr3 (1-266)||(41755056-41755320)
chr3 (291-538)||(41754783-41755031)
chr3 (334-538)||(55121866-55122071)
chr3 (154-266)||(11511302-11511414)
chr3 (155-266)||(55122137-55122248)
chr3 (156-266)||(55121529-55121639)
chr3 (159-266)||(50122319-50122426)
chr3 (155-261)||(11510172-11510278)
chr3 (199-266)||(52087638-52087705)
chr3 (156-237)||(1387456-1387537)
chr3 (156-237)||(41754321-41754401)
chr3 (290-331)||(11510335-11510376)
chr3 (157-192)||(31951854-31951889)
chr3 (220-268)||(5136584-5136632)
chr3 (293-329)||(41754455-41754491)
chr3 (216-263)||(51755476-51755523)
chr3 (152-205)||(6525375-6525428)
chr3 (290-323)||(55121693-55121726)
chr3 (186-266)||(6144324-6144403)
chr3 (154-266)||(6842447-6842559)
[»] chr7 (13 HSPs)
chr7 (292-538)||(46089072-46089319)
chr7 (155-266)||(46088916-46089027)
chr7 (156-264)||(46089676-46089784)
chr7 (156-261)||(46741410-46741515)
chr7 (154-266)||(47405453-47405565)
chr7 (156-266)||(45350841-45350954)
chr7 (156-266)||(35200789-35200900)
chr7 (156-261)||(31873335-31873440)
chr7 (215-266)||(30846821-30846875)
chr7 (156-266)||(4997289-4997400)
chr7 (154-236)||(47776264-47776346)
chr7 (156-261)||(19804631-19804736)
chr7 (159-266)||(9494832-9494942)
[»] chr4 (11 HSPs)
chr4 (349-538)||(40047602-40047792)
chr4 (156-237)||(53777101-53777182)
chr4 (164-266)||(40900648-40900750)
chr4 (176-261)||(40900224-40900309)
chr4 (156-203)||(53777198-53777245)
chr4 (154-212)||(31242833-31242891)
chr4 (154-212)||(26791581-26791639)
chr4 (170-231)||(67573-67634)
chr4 (154-231)||(9472790-9472867)
chr4 (217-266)||(46169227-46169276)
chr4 (169-241)||(39666537-39666609)
[»] scaffold0153 (1 HSPs)
scaffold0153 (156-266)||(17392-17502)
[»] chr2 (18 HSPs)
chr2 (154-268)||(33667868-33667982)
chr2 (157-261)||(33667702-33667806)
chr2 (156-266)||(13863012-13863121)
chr2 (156-236)||(958667-958747)
chr2 (159-268)||(16118981-16119090)
chr2 (215-266)||(29600756-29600807)
chr2 (154-205)||(30271006-30271057)
chr2 (215-266)||(39033547-39033598)
chr2 (156-266)||(43977527-43977638)
chr2 (199-261)||(16340578-16340640)
chr2 (217-266)||(33222611-33222663)
chr2 (155-237)||(43978176-43978258)
chr2 (154-231)||(3206745-3206821)
chr2 (159-220)||(19694175-19694236)
chr2 (291-327)||(13862930-13862966)
chr2 (223-263)||(16119124-16119164)
chr2 (155-231)||(42176014-42176090)
chr2 (168-236)||(42177273-42177341)
[»] chr6 (6 HSPs)
chr6 (155-259)||(5722990-5723094)
chr6 (156-266)||(19757891-19758002)
chr6 (206-261)||(25987122-25987177)
chr6 (290-327)||(25987232-25987269)
chr6 (215-266)||(117254-117305)
chr6 (215-266)||(17337644-17337695)
[»] chr1 (10 HSPs)
chr1 (156-268)||(10974748-10974860)
chr1 (156-266)||(33205418-33205528)
chr1 (183-266)||(18609056-18609138)
chr1 (215-266)||(26607461-26607512)
chr1 (161-259)||(21263308-21263406)
chr1 (216-266)||(37992576-37992626)
chr1 (215-261)||(49875370-49875416)
chr1 (156-261)||(15660260-15660365)
chr1 (216-261)||(49875001-49875046)
chr1 (157-261)||(52427527-52427631)
[»] chr5 (9 HSPs)
chr5 (155-266)||(39742508-39742622)
chr5 (155-194)||(42098236-42098275)
chr5 (155-231)||(30966706-30966782)
chr5 (154-266)||(19228672-19228787)
chr5 (159-212)||(6268106-6268159)
chr5 (154-195)||(30966024-30966065)
chr5 (223-268)||(35777042-35777087)
chr5 (219-266)||(2170581-2170631)
chr5 (156-236)||(13707357-13707437)
[»] chr8 (6 HSPs)
chr8 (154-229)||(21835245-21835320)
chr8 (215-266)||(44934513-44934564)
chr8 (215-261)||(25994442-25994488)
chr8 (215-261)||(43519898-43519944)
chr8 (219-266)||(40740903-40740953)
chr8 (215-259)||(41858518-41858562)
[»] scaffold1500 (1 HSPs)
scaffold1500 (168-236)||(818-886)
[»] scaffold1379 (1 HSPs)
scaffold1379 (155-262)||(464-574)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 41755320 - 41755056
Alignment:
Q  1 tagtgcttaaaaatctgaagtatagattcccagcatatctggattgtatatttactcatatttagaaaagaaggtgggcgagttacaacacaaatacttc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41755320 tagtgcttaaaaatctgaagtatagattcccagcatatctagattgtatatttactcatatttagaaaagaaggtgggtgagttacaacacaaatacttc 41755221  T
Q  101 caaatatataatccatcaaaatacatactctccttacctattatatcttgcacatgagaattgctgtttacacatgttataaggctgagaaacactaata 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||    
T  41755220 caaatatataatcc-tcaaaatacatactctccttacctattatatcttgcacatgagaattgctgttgacacatgttataaggctgagaaacaccagta 41755122  T
Q  201 aaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  41755121 aaagacgaaaatgtcccctcgacagttaactactgaaataatgaaccggctgcaattaactgccga 41755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 291 - 538
Target Start/End: Complemental strand, 41755031 - 41754783
Alignment:
Q  291 catcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtcactatgtttggttttgcatgcggcatgatgctcttattatatc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41755031 catcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtcactatgtttggttttgcatgcggcataatgctcttattatatc 41754932  T
Q  391 attctattactattttccttccaacact--agcaatattgactctttcaaaaaacgaattgaacagaagctgagaataagaacatagtgacacagtaaca 488  Q
    ||||||||||||||||||||||||||||  | |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41754931 attctattactattttccttccaacactacaacaatattgactc-ttcgaaaaacgaattgaacagaagttgagaataagaacatagtgacacagtaaca 41754833  T
Q  489 cctacaataatgtacacaatcccatacgccataacttagtactagtatta 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41754832 cctacaataatgtacacaatcccatacgccataacttagtactagtatta 41754783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 334 - 538
Target Start/End: Complemental strand, 55122071 - 55121866
Alignment:
Q  334 tagttaactgtgtcactatgtttggttttgcatgcggcatgatgctcttattatatcattctattactattttccttccaacact--agcaatattgact 431  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  55122071 tagttaactctgtcactatgtttggttttgcatgcggcataatgctgttattatatcattctattactattttccttccaacactccaacaatattgact 55121972  T
Q  432 ctttcaaaaaacgaattgaacagaagctgagaataagaacatagtgacacagtaacacctacaataatgtacacaatcccatacgccataacttagtact 531  Q
    ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55121971 ctt-caaaaaacgaattgaacagaagctgagaataggaccatagtgacacagtaacacctacaataatgtacacaatcccatacgccataacttagtact 55121873  T
Q  532 agtatta 538  Q
    |||||||    
T  55121872 agtatta 55121866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 11511414 - 11511302
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 253  Q
    ||||||||||  ||| |||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  11511414 atgagaattgtcgttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgcctcctcgacagttaactaccgaaataatgaaccggctgc 11511315  T
Q  254 agttaactgccga 266  Q
    |||||||| ||||    
T  11511314 agttaactaccga 11511302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 55122248 - 55122137
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 254  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55122248 tgagaattgttgttggcacatgtcataagactgagaaacactagtaaaagacgaaaatgccccctcgacagttaactaccgaaataatgaaccggttgca 55122149  T
Q  255 gttaactgccga 266  Q
    ||||||| ||||    
T  55122148 gttaactcccga 55122137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 55121529 - 55121639
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||| |||| ||||||||||||||||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||| |    
T  55121529 gagaattgttgttgacacatgttataaggctgataaacactagtaaaggataaaaatgccccctcggcagttaactaccgaaataatgaaccggttgcgg 55121628  T
Q  256 ttaactgccga 266  Q
    |||||| ||||    
T  55121629 ttaactaccga 55121639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 50122319 - 50122426
Alignment:
Q  159 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagtta 258  Q
    ||||||||| |||||||||||||||||||| |||||| | ||||||| ||||||||| ||  ||||||||||||||||||| | ||||||||||||||||    
T  50122319 aattgctgtatacacatgttataaggctgaaaaacacaagtaaaagacgaaaatgccaccgtgacagttaactaccgaaattaagaaccggctgcagtta 50122418  T
Q  259 actgccga 266  Q
    ||||||||    
T  50122419 actgccga 50122426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 11510172 - 11510278
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 254  Q
    ||||||||| |||| ||||||||||||||||||| ||||||   ||||| | ||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  11510172 tgagaattgatgttgacacatgttataaggctgaaaaacaccggtaaaatacgaaaatatcccctcgacggttaactaccgaaataatgaaccagctgca 11510271  T
Q  255 gttaact 261  Q
    |||||||    
T  11510272 gttaact 11510278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 52087638 - 52087705
Alignment:
Q  199 taaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  52087638 taaaagacgaaaataccccctcgacagttaactaccgaagtaatgaaccggctgcagttaagtgccga 52087705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 1387456 - 1387537
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 237  Q
    ||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||| |  | ||||||||||||||||    
T  1387456 gagaattgctgtttacacatgctataagactgaaaaatactaataaaagatgaaaatgcctctgcaacagttaactaccgaa 1387537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 41754321 - 41754401
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 237  Q
    |||||||||| || |||||||||||||||||||||||||| | ||||||| |||||||| || |||||||||||||| ||||    
T  41754321 gagaattgcttttgacacatgttataaggctgagaaacac-agtaaaagacgaaaatgctccatcgacagttaactatcgaa 41754401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 11510335 - 11510376
Alignment:
Q  290 ccatcggcacttaagtgccgaggatctcaaaactacaaattt 331  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  11510335 ccatcggcacttaagtgcctaggatctcaaaactacaaattt 11510376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 31951889 - 31951854
Alignment:
Q  157 agaattgctgtttacacatgttataaggctgagaaa 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  31951889 agaattgctgtttacacatgttataaggctgagaaa 31951854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 5136584 - 5136632
Alignment:
Q  220 cgacagttaactaccgaaataatgaaccggctgcagttaactgccgacg 268  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||||||    
T  5136584 cgacagttaactaccgaaatttggaaccggctgcagttaactaccgacg 5136632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 41754455 - 41754491
Alignment:
Q  293 tcggcacttaagtgccgaggatctcaaaactacaaat 329  Q
    |||||||||||||| ||||||||||||||||||||||    
T  41754455 tcggcacttaagtggcgaggatctcaaaactacaaat 41754491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 51755523 - 51755476
Alignment:
Q  216 ccctcgacagttaactaccgaaataatgaaccggctgcagttaactgc 263  Q
    |||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  51755523 ccctcgacagttaactgccgaaatatggaaccggctgccgttaactgc 51755476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 6525428 - 6525375
Alignment:
Q  152 acatgagaattgctgtttacacatgttataaggctgagaaacactaataaaaga 205  Q
    |||||| ||| ||||| ||||||||||| | ||||||||||||||| |||||||    
T  6525428 acatgaaaatggctgtatacacatgttaaagggctgagaaacactagtaaaaga 6525375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 55121693 - 55121726
Alignment:
Q  290 ccatcggcacttaagtgccgaggatctcaaaact 323  Q
    ||||||||||||||||| ||||||||||||||||    
T  55121693 ccatcggcacttaagtgtcgaggatctcaaaact 55121726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 6144403 - 6144324
Alignment:
Q  186 tgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||||||   || |||||| ||| |||||| |||||| ||||| ||  ||||||||||||||||||| ||||    
T  6144403 tgagaaacactaataatttatcaaaatgtccc-tcgacaattaactgccgaattatggaaccggctgcagttaactaccga 6144324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 6842447 - 6842559
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 253  Q
    |||| ||||| ||| ||||| ||||| | |||||| |||||||| |||||||   |||| |||| ||| || |||||| ||||   | | ||||||||||    
T  6842447 atgaaaattgttgtatacacgtgttaaagggctgataaacactagtaaaagaccgaaataccccttcggcaattaactgccgaggaagttaaccggctgc 6842546  T
Q  254 agttaactgccga 266  Q
    |||||||||||||    
T  6842547 agttaactgccga 6842559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 292 - 538
Target Start/End: Original strand, 46089072 - 46089319
Alignment:
Q  292 atcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtcactatgtttggttttgcatgcggcatgatgctcttattatatca 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
T  46089072 atcggcacttaagtgccgaggatctcaaaactacaaatttggtagttaactgtgtgactatgtttggttttgcatgcggcataatgctgttattatatca 46089171  T
Q  392 ttctattactattttccttccaacact--agcaatattgactctttcaaaaaacgaattgaacagaagctgagaataagaacatagtgacacagtaacac 489  Q
    |||||||||||||||||||||||||||  | |||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46089172 ttctattactattttccttccaacactacaacaatattggc-ccttcaaaaaacgaattgaacagaagctcagaataagaacatagtgacacagtaacac 46089270  T
Q  490 ctacaataatgtacacaatcccatacgccataacttagtactagtatta 538  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  46089271 ctacaataatgtacacaatctcatacgccataacttggtactagtatta 46089319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 46088916 - 46089027
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 254  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  46088916 tgagaattgttgtttacacatgttataaggctgagaaacactagtaaaagacaaaaatgccccctcgccagttaactaccgaaataatgaaccggctgca 46089015  T
Q  255 gttaactgccga 266  Q
    ||||||| ||||    
T  46089016 gttaactcccga 46089027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 46089784 - 46089676
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||||| || |||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  46089784 gagaattgcttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgccccctcggcagttaactaccaaaatagtgaaccggctgcag 46089685  T
Q  256 ttaactgcc 264  Q
    |||||||||    
T  46089684 ttaactgcc 46089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 46741515 - 46741410
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| |||||| |||||||||||||||||||| |||||||||    
T  46741515 gagaattgctctttacacatgttataagactgagaaacactagtaaaagacgaaaatgtcccttcgacaattaactaccgaaataatgaatcggctgcag 46741416  T
Q  256 ttaact 261  Q
    ||||||    
T  46741415 ttaact 46741410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 47405565 - 47405453
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 253  Q
    |||| ||||| ||| ||| |||||||||||| ||| ||||||   ||||||| ||||||| ||||||| ||||||||||| ||||||| |||||||||||    
T  47405565 atgaaaattgttgtatacgcatgttataaggttgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaaccggctgc 47405466  T
Q  254 agttaactgccga 266  Q
    |||||||| ||||    
T  47405465 agttaactaccga 47405453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 45350841 - 45350954
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga--aataat-gaaccggctg 252  Q
    |||||||||||||||||||||||||||| ||||||||||| | ||||| |  ||||| |||||||  ||||||||| ||||  || |||  |||||||||    
T  45350841 gagaattgctgtttacacatgttataagactgagaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaaataaaaccggctg 45350940  T
Q  253 cagttaactgccga 266  Q
    ||||||||||||||    
T  45350941 cagttaactgccga 45350954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 35200900 - 35200789
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatg-aaccggctgca 254  Q
    |||||||| ||||||||||| | ||| |||||| ||||||   |||||||||||||||||||  || |||||| |||||||| |  || |||||||||||    
T  35200900 gagaattgttgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagttttgaaaccggctgca 35200801  T
Q  255 gttaactgccga 266  Q
    ||||||| ||||    
T  35200800 gttaactaccga 35200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 31873335 - 31873440
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||| |||| |||||| | |||||||||| ||||||   |||||||||||||||| ||  || ||||||||||||||| |   |||||| ||||||    
T  31873335 gagaattgttgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagtttagaaccgactgcag 31873434  T
Q  256 ttaact 261  Q
    ||||||    
T  31873435 ttaact 31873440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 30846875 - 30846821
Alignment:
Q  215 cccctcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||||||| |||||||   || ||||||||||||||||||||||||    
T  30846875 cccctcgacagttaactgccgaaattttaaagaaccggctgcagttaactgccga 30846821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 4997289 - 4997400
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatg-aaccggctgca 254  Q
    |||||||||||||||||||| | ||| || ||| ||||||   ||||||| |||||| ||||  || ||||||||||||||| |  || |||||||| ||    
T  4997289 gagaattgctgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagttttgaaaccggctaca 4997388  T
Q  255 gttaactgccga 266  Q
    ||||||| ||||    
T  4997389 gttaactaccga 4997400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 47776264 - 47776346
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 236  Q
    |||||||||| ||||  ||||| | ||||||||||||||||| | ||||| | ||   |||||||||||||||||||| ||||    
T  47776264 atgagaattgatgttcccacatttgataaggctgagaaacacgagtaaaatacgattttgccccctcgacagttaactgccga 47776346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 19804736 - 19804631
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||| |||| |||||||| ||| | |||| ||||||   ||||||| |||||||| |   ||||| |||||||||||| |   |||||||||||||    
T  19804736 gagaattgttgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagtttggaaccggctgcag 19804637  T
Q  256 ttaact 261  Q
    ||||||    
T  19804636 ttaact 19804631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 9494942 - 9494832
Alignment:
Q  159 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga---aataatgaaccggctgcag 255  Q
    ||||| |||| |||||| | |||||||||||  |||| | ||||| | | | ||||||||||| ||||||||| ||||   | |||  ||||||||||||    
T  9494942 aattgttgttgacacatttcataaggctgaggcacacaagtaaaataggtatatgccccctcggcagttaactgccgaggaattaaaaaaccggctgcag 9494843  T
Q  256 ttaactgccga 266  Q
    |||||||||||    
T  9494842 ttaactgccga 9494832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 7e-69; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 349 - 538
Target Start/End: Complemental strand, 40047792 - 40047602
Alignment:
Q  349 ctatgtttggttttgcatgcggcatgatgctcttattatatcattctattactattttccttccaacactag--caatattgactctttcaaaaaacgaa 446  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||   |||||||| ||||| |||||||||||    
T  40047792 ctatgtttggttttgcatgcggcataatgctgttattatatcattctattactattttccttccaacactacaacaatattggctctt-caaaaaacgaa 40047694  T
Q  447 ttgaacagaagctgagaataagaacatagtgacacagtaacacctacaataatgtacacaatcccatacgccataacttagtactagtatta 538  Q
    ||| |||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40047693 ttgtacaggagctgagaataagaacataataacacagtaaaacctacaataatgtacacaatcacatacgccataacttagtactagtatta 40047602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 53777101 - 53777182
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  || |||||||||||||||    
T  53777101 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgcccctgcggcagttaactaccgaa 53777182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 40900750 - 40900648
Alignment:
Q  164 ctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgc 263  Q
    ||||| |||||||||||| ||||||||||||| | |||||||  ||||||||||||||||||||||||| ||||||||| ||| | ||||| |||||| |    
T  40900750 ctgttgacacatgttatatggctgagaaacaccagtaaaagacaaaaatgccccctcgacagttaactatcgaaataataaactgactgcaattaactac 40900651  T
Q  264 cga 266  Q
    |||    
T  40900650 cga 40900648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 40900224 - 40900309
Alignment:
Q  176 gttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    |||||| ||| ||||||||| | ||||||| ||||||||||| ||| |||||||||| ||||||||| |||||||| |||||||||    
T  40900224 gttatatggccgagaaacaccagtaaaagacgaaaatgccccatcggcagttaactatcgaaataataaaccggctacagttaact 40900309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 53777245 - 53777198
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  53777245 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaa 53777198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 31242891 - 31242833
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaat 212  Q
    |||||||||||||||||||||||| | |||||||||||||||   ||||||| ||||||    
T  31242891 atgagaattgctgtttacacatgtgagaaggctgagaaacacatgtaaaagacgaaaat 31242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 26791581 - 26791639
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaat 212  Q
    |||||||||||||||||||||| | | |||||||||||||||   ||||||| ||||||    
T  26791581 atgagaattgctgtttacacatatgagaaggctgagaaacacatgtaaaagacgaaaat 26791639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 67573 - 67634
Alignment:
Q  170 acacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 231  Q
    |||||| | |||||||||||| || | | ||||| | |||||||||||||||||||||||||    
T  67573 acacatatcataaggctgagacacgcaagtaaaatacgaaaatgccccctcgacagttaact 67634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 9472790 - 9472867
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 231  Q
    |||| |||||||| | |||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  |||||||||    
T  9472790 atgaaaattgctgatgacacatttgataaggctgagaaacactagtaaaatactaaaataccccctctgcagttaact 9472867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 46169276 - 46169227
Alignment:
Q  217 cctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||| ||||||||| ||||| ||  ||||||||||||||||||||||||    
T  46169276 cctcgtcagttaactgccgaattatggaaccggctgcagttaactgccga 46169227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 39666609 - 39666537
Alignment:
Q  169 tacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataa 241  Q
    ||||||| |||||||||||| ||||||  ||||| |||||||||  | || | ||||||||||| ||||||||    
T  39666609 tacacatattataaggctgaaaaacacatataaaggatgaaaatatctccactacagttaactatcgaaataa 39666537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 17502 - 17392
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17502 gagaattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgacccctcggcagttaactaccgaaataatgaaccggctgcag 17403  T
Q  256 ttaactgccga 266  Q
    |||||| ||||    
T  17402 ttaactaccga 17392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 33667982 - 33667868
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgc 253  Q
    |||||||||| | || |||||||||||||||||||||||||| | ||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||    
T  33667982 atgagaattgtttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgcctcctcagcagttaactaccgaaataatgaaccggctgc 33667883  T
Q  254 agttaactgccgacg 268  Q
    |||||||| ||||||    
T  33667882 agttaactaccgacg 33667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 33667702 - 33667806
Alignment:
Q  157 agaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagt 256  Q
    ||||||||| || ||||||||||||||||||||||| || | ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  33667702 agaattgcttttgacacatgttataaggctgagaaataccagtaaaagatgaaaatctcccctcggcagttaactaccgaaataatgaaccggctgcagt 33667801  T
Q  257 taact 261  Q
    |||||    
T  33667802 taact 33667806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 13863121 - 13863012
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||||| || ||||||||||||||| |||||||||| ||||||||| ||||||| | | |||||||||||||| |||||||||||| | | |||||    
T  13863121 gagaattgctattgacacatgttataaggttgagaaacaccaataaaagacgaaaatg-ctcatcgacagttaactatcgaaataatgaatcagttgcag 13863023  T
Q  256 ttaactgccga 266  Q
    |||||| ||||    
T  13863022 ttaactcccga 13863012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 958747 - 958667
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 236  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||| |  ||||| |||||||  ||||||||||||||    
T  958747 gagaattgctgttcacacatgttataaggctgagaaacaccagtaaaataccaaaataccccctctgcagttaactaccga 958667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 16118981 - 16119090
Alignment:
Q  159 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagtta 258  Q
    |||||||||| |||||| | ||| |||||| ||||||   |||| || |||||||||||  | || ||||||||||||| |||  ||||| |||||||||    
T  16118981 aattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaagaaaccgactgcagtta 16119080  T
Q  259 actgccgacg 268  Q
    ||||||||||    
T  16119081 actgccgacg 16119090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 29600756 - 29600807
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||| ||||    
T  29600756 cccctcgacagttaactgccgaattatggaaccggctgcagttaactaccga 29600807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 30271006 - 30271057
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaaga 205  Q
    |||||||||| ||| ||||||||||| | ||||||||||||||| |||||||    
T  30271006 atgagaattgttgtatacacatgttaaagggctgagaaacactagtaaaaga 30271057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 39033598 - 39033547
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||| ||||||||||||||| ||   |||||||||||||||||||||||    
T  39033598 cccctcggcagttaactaccgaattatgaaaccggctgcagttaactgccga 39033547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 43977527 - 43977638
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatg-aaccggctgca 254  Q
    ||||||||||||||| |||| | |||  ||||| ||||||   ||||||| |||||||||||  || ||| ||||||||||| |  || |||||||||||    
T  43977527 gagaattgctgtttatacatatgatagagctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagttttgaaaccggctgca 43977626  T
Q  255 gttaactgccga 266  Q
    ||||||| ||||    
T  43977627 gttaactaccga 43977638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 16340640 - 16340578
Alignment:
Q  199 taaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    |||||||||||||||  ||  || ||||||||||||||| ||| ||||||| |||||||||||    
T  16340640 taaaagatgaaaatgttcctgcggcagttaactaccgaagtaaggaaccggttgcagttaact 16340578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 33222611 - 33222663
Alignment:
Q  217 cctcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 266  Q
    ||||| |||||||||||||||||   || ||||||||||||||||||||||||    
T  33222611 cctcggcagttaactaccgaaattttaaagaaccggctgcagttaactgccga 33222663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 43978258 - 43978176
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaa 237  Q
    ||||| ||||||||||||||| | ||| |||||| ||||||   ||||||| |||||||||||  ||  ||||||||||||||    
T  43978258 tgagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaa 43978176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 3206745 - 3206821
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 231  Q
    |||| ||||| |||| |||||| | |||||||||| | ||||  ||||||||| |||||||||| |||||||||||||    
T  3206745 atgaaaattgatgttcacacatatcataaggctgaaacacacatataaaagattaaaatgcccc-tcgacagttaact 3206821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 19694175 - 19694236
Alignment:
Q  159 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctc 220  Q
    |||||||||| |||||||||||| ||||||||||||| | ||||| |  ||||| |||||||    
T  19694175 aattgctgttcacacatgttatagggctgagaaacaccagtaaaataccaaaataccccctc 19694236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 13862966 - 13862930
Alignment:
Q  291 catcggcacttaagtgccgaggatctcaaaactacaa 327  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  13862966 catcggcacttaattgccgaggatcttaaaactacaa 13862930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 16119164 - 16119124
Alignment:
Q  223 cagttaactaccgaaataatgaaccggctgcagttaactgc 263  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  16119164 cagtttactaccgaagtaaagaaccggctgcagttaactgc 16119124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 42176014 - 42176090
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 231  Q
    ||||||||||||  ||||||| | |||||||||| |||||||| ||||| |  ||||| |||||||  |||||||||    
T  42176014 tgagaattgctgaatacacatttgataaggctgaaaaacactagtaaaataccaaaataccccctctgcagttaact 42176090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 42177341 - 42177273
Alignment:
Q  168 ttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 236  Q
    |||||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  ||||||||| ||||    
T  42177341 ttacacatttgataaggctgagaaacactattaaaataccaaaataccccctctgcagttaactgccga 42177273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 5722990 - 5723094
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgca 254  Q
    ||||||||||| || ||||||  |||||||||||||||||| | ||||||| |||||||||  |||  |||||||||| |||||||||||||||||||||    
T  5722990 tgagaattgcttttgacacataatataaggctgagaaacaccagtaaaagacgaaaatgccttctcagcagttaactatcgaaataatgaaccggctgca 5723089  T
Q  255 gttaa 259  Q
    |||||    
T  5723090 gttaa 5723094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 19758002 - 19757891
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaat-aatgaaccggctgca 254  Q
    ||||||||||||| |||||| | ||| |||||| ||| ||  |||||||| |||||| | ||  |  ||||||||||||||| | || ||||||||||||    
T  19758002 gagaattgctgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagttaaagaaccggctgca 19757903  T
Q  255 gttaactgccga 266  Q
    ||||||||||||    
T  19757902 gttaactgccga 19757891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 25987122 - 25987177
Alignment:
Q  206 tgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    |||||||| ||| ||  |||||||||||||||||||||||| ||||||||||||||    
T  25987122 tgaaaatgtcccatcagcagttaactaccgaaataatgaactggctgcagttaact 25987177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 25987232 - 25987269
Alignment:
Q  290 ccatcggcacttaagtgccgaggatctcaaaactacaa 327  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  25987232 ccatcggcacttaagtgccgaggatctcagaactacaa 25987269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 117254 - 117305
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||| ||||||||| ||||| ||  ||||||||||||||||||||||||    
T  117254 cccctcggcagttaactgccgaattatggaaccggctgcagttaactgccga 117305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 17337644 - 17337695
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||    
T  17337644 cccctcgacagttaactgccgaattaaggaactggctgcagttaactaccga 17337695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 10974860 - 10974748
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||||||| |||| |||||| | ||| |||||| ||||||  |||||||| ||||||||| |  |||||||||||||| ||| ||| ||||||| |||||    
T  10974860 gagaattgttgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaaccggttgcag 10974761  T
Q  256 ttaactgccgacg 268  Q
    |||||||||||||    
T  10974760 ttaactgccgacg 10974748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 33205418 - 33205528
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    |||| ||||||||||||||| | ||| |||||| ||||||   ||||||| ||||||||| |  || |||||| |||||||| |   |||||||||| ||    
T  33205418 gagagttgctgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagtttggaaccggctgtag 33205517  T
Q  256 ttaactgccga 266  Q
    |||||||||||    
T  33205518 ttaactgccga 33205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 18609056 - 18609138
Alignment:
Q  183 ggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||||| |||   || |||||||||| | ||||||||||| ||||| ||   |||||||||||||||||||||||    
T  18609056 ggctgagaaacactagtaatttatcaaaatgcccctt-gacagttaactgccgaattatgaaaccggctgcagttaactgccga 18609138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 26607512 - 26607461
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||| ||||||||| ||||| ||  ||||||||||||||||||||||||    
T  26607512 cccctcggcagttaactgccgaattatggaaccggctgcagttaactgccga 26607461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 21263308 - 21263406
Alignment:
Q  161 ttgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagttaa 259  Q
    |||||||||||| || | ||| |||||| ||||||   |||||||||||||| ||||  || ||||||||||||||| |   |||||| ||||||||||    
T  21263308 ttgctgtttacatatatgatagggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagtttggaaccgactgcagttaa 21263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 37992626 - 37992576
Alignment:
Q  216 ccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    |||||||||||||||| ||||| ||   |||||||||||||||||||||||    
T  37992626 ccctcgacagttaactgccgaattatgaaaccggctgcagttaactgccga 37992576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 49875416 - 49875370
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    ||||||||||||||||||||||| ||  |||||| ||||||||||||    
T  49875416 cccctcgacagttaactaccgaattatggaaccgactgcagttaact 49875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 15660365 - 15660260
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcag 255  Q
    ||||||||||||| |||||| | ||| |||||| ||||||  ||||| || |||||||| |   || ||||||||||||||  |   |||||||||||||    
T  15660365 gagaattgctgttgacacatatgatagggctgaaaaacacatataaatgacgaaaatgctcatgcggcagttaactaccgatgtttggaaccggctgcag 15660266  T
Q  256 ttaact 261  Q
    ||||||    
T  15660265 ttaact 15660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 49875001 - 49875046
Alignment:
Q  216 ccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    |||||||||||||||| ||||| ||  |||||||||||||||||||    
T  49875001 ccctcgacagttaactgccgaattatggaaccggctgcagttaact 49875046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 52427631 - 52427527
Alignment:
Q  157 agaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccgaaataatgaaccggctgcagt 256  Q
    |||||||||||| ||| || | ||| | |||| ||||||   ||||||| ||||||||| |  | |||||||||||||||| |   ||||||||||||||    
T  52427631 agaattgctgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagtttggaaccggctgcagt 52427532  T
Q  257 taact 261  Q
    |||||    
T  52427531 taact 52427527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 39742508 - 39742622
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga--aataat-gaaccggct 251  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||| |  ||||| |||||||  ||||||||| ||||  || |||  ||||| ||    
T  39742508 tgagaattgctgtttacacatgttatagggctgagaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaaataaaaccgact 39742607  T
Q  252 gcagttaactgccga 266  Q
    |||||||||||||||    
T  39742608 gcagttaactgccga 39742622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 42098236 - 42098275
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaaca 194  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42098236 tgagaattgctgtttacacatgttataaggctgagaaaca 42098275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 30966782 - 30966706
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaact 231  Q
    ||||||||| ||| ||||||||||| | ||||||||||||||| |||||||  ||||| |||| ||| |||||||||    
T  30966782 tgagaattgttgtatacacatgttaaagggctgagaaacactagtaaaagaccaaaataccccttcggcagttaact 30966706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 19228787 - 19228672
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga---aataatgaaccggc 250  Q
    |||| ||||| |||| |||||| | |||||||||||| |||| | ||||| | | ||||||||||||| ||||||||| ||||   | |||  ||||||     
T  19228787 atgaaaattgttgttgacacatttgataaggctgagacacacaagtaaaatacgtaaatgccccctcggcagttaactgccgatgaattaaaaaaccgga 19228688  T
Q  251 tgcagttaactgccga 266  Q
    ||||||||||||||||    
T  19228687 tgcagttaactgccga 19228672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 6268159 - 6268106
Alignment:
Q  159 aattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaat 212  Q
    ||||||||| |||||||||||||||||||| ||| ||  |||||||| ||||||    
T  6268159 aattgctgtatacacatgttataaggctgaaaaatacctataaaagacgaaaat 6268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 30966024 - 30966065
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacac 195  Q
    |||||||||||||| ||||||||||| | |||||||||||||    
T  30966024 atgagaattgctgtatacacatgttaaagggctgagaaacac 30966065  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 35777087 - 35777042
Alignment:
Q  223 cagttaactaccgaaataatgaaccggctgcagttaactgccgacg 268  Q
    ||||||||||||||| |   ||||||||||||||||||||||||||    
T  35777087 cagttaactaccgaagtttggaaccggctgcagttaactgccgacg 35777042  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 2170631 - 2170581
Alignment:
Q  219 tcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 266  Q
    |||||||||||||| ||||||   || ||||||||||||||||||||||||    
T  2170631 tcgacagttaactatcgaaattttaaagaaccggctgcagttaactgccga 2170581  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 13707357 - 13707437
Alignment:
Q  156 gagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 236  Q
    |||||||| |||| |||||||||||| || |||||||||| | ||||| |  ||||| |||||||  ||||||||| ||||    
T  13707357 gagaattgatgttcacacatgttatagggttgagaaacaccagtaaaataccaaaataccccctctgcagttaactgccga 13707437  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 21835320 - 21835245
Alignment:
Q  154 atgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaa 229  Q
    |||||||||||||  ||||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  |||||||    
T  21835320 atgagaattgctgaatacacatttgataaggctgagaaacactagtaaaataccaaaataccccctctgcagttaa 21835245  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 44934564 - 44934513
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||||||||||||| ||   ||||||||||||||| |||||||    
T  44934564 cccctcgacagttaactaccgaattatgaaaccggctgcagttatctgccga 44934513  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 25994442 - 25994488
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  25994442 cccctcgacagttaactgccgaattatggaaccggctgcagttaact 25994488  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 43519898 - 43519944
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaact 261  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  43519898 cccctcgacagttaactgccgaattatggaaccggctgcagttaact 43519944  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 40740903 - 40740953
Alignment:
Q  219 tcgacagttaactaccgaaat---aatgaaccggctgcagttaactgccga 266  Q
    ||||||||||||| |||||||   || ||||||||||||||||||||||||    
T  40740903 tcgacagttaactgccgaaattttaaagaaccggctgcagttaactgccga 40740953  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 41858518 - 41858562
Alignment:
Q  215 cccctcgacagttaactaccgaaataatgaaccggctgcagttaa 259  Q
    ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  41858518 cccctcgacagttaactgccgaattatggaaccggctgcagttaa 41858562  T

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Target: scaffold1500 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 886 - 818
Alignment:
Q  168 ttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactaccga 236  Q
    |||||||| | ||||||||||||||||||| ||||| |  ||||| |||||||  ||||||||| ||||    
T  886 ttacacatttgataaggctgagaaacactattaaaataccaaaataccccctctgcagttaactgccga 818  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 574 - 464
Alignment:
Q  155 tgagaattgctgtttacacatgttataaggctgagaaacactaataaaagatgaaaatgccccctcgacagttaactacc---gaaataatgaaccggct 251  Q
    ||||||||| ||||||||||| | ||||| ||||||||||| | ||||| | ||   ||| |||||| ||||||||| ||   ||| |||| | ||||||    
T  574 tgagaattgatgtttacacatttgataagactgagaaacacgagtaaaatacgattttgctccctcggcagttaactgccgaagaattaataatccggct 475  T
Q  252 gcagttaactg 262  Q
    |||||||||||    
T  474 gcagttaactg 464  T

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