View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_30 (Length: 531)
Name: NF8921_low_30
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_30 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Original strand, 23922093 - 23922610
Alignment:
| Q |
14 |
tttggtggtccactttctctatttgatagaaacttaataagcattggccactgaaaaccataaaggataccaaaatcaatgatatgaagggtttcagctt |
113 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922093 |
tttggcggtccaccttctctatttgatagaaacttaataagcattggccactgaaaaccataaaggataccaaaatcaatgatatgaagggtttcagctt |
23922192 |
T |
|
| Q |
114 |
ttgcagcaactttcataatcatttcatttgcaaacaaatatgcaaatttcttgaatggagggctagtaaaatgaacttgatatgctttcaaaaactcagc |
213 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922193 |
ttgcagcaactttcataatcatttcatttccaaacaaatatgcaaatttcttgaatggagggctagtaaaatgaacttgatatgctttcaaaaactcagc |
23922292 |
T |
|
| Q |
214 |
agcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggcgcgcctcaaggccattggcaaagtaatgagcc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23922293 |
agcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcatacaaggcgcgcctcaaggccattggcaaagtaatgagcc |
23922392 |
T |
|
| Q |
314 |
accctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatttctattgtcattggcatacatagtttgtgaac |
413 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23922393 |
accctttgagatgcttctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttctattgtcattggcatacatagcttgtgaac |
23922492 |
T |
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| Q |
414 |
acataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaacctttccttcgttagatgaaggtggttgctcattctg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922493 |
acataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttgggacgaacctttccttcgttagatgaaggtggttgctcattctg |
23922592 |
T |
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| Q |
514 |
caaaaattcacgttccac |
531 |
Q |
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| T |
23922593 |
caaaaattcacgttccac |
23922610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Complemental strand, 23904891 - 23904374
Alignment:
| Q |
14 |
tttggtggtccactttctctatttgatagaaacttaataagcattggccactgaaaaccataaaggataccaaaatcaatgatatgaagggtttcagctt |
113 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23904891 |
tttggcggtccaccttctctatttgatagaaacttaataagcattggccactgaaaaccataaaggacaccaaaatcaatgatatgaagggtttcagctt |
23904792 |
T |
|
| Q |
114 |
ttgcagcaactttcataatcatttcatttgcaaacaaatatgcaaatttcttgaatggagggctagtaaaatgaacttgatatgctttcaaaaactcagc |
213 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904791 |
ttgcagcaactttcataatcatttcatttccaaacaaatatgcaaatttcttgaatggagggctagtaaaatgaacttgatatgctttcaaaaactcagc |
23904692 |
T |
|
| Q |
214 |
agcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggcgcgcctcaaggccattggcaaagtaatgagcc |
313 |
Q |
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|||||| |||||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23904691 |
agcagtaattctcttagtgctcggcgaggaatagaatgtttgtgcaccagctctatcgcctacaaggcgagcctcaaggccattggcaaagtaatgagcc |
23904592 |
T |
|
| Q |
314 |
accctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatttctattgtcattggcatacatagtttgtgaac |
413 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23904591 |
accctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttctattgtcattggcatacatagcttgtgaac |
23904492 |
T |
|
| Q |
414 |
acataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaacctttccttcgttagatgaaggtggttgctcattctg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23904491 |
acataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttcggacgaacctttccttcattagatgaaggtggttgctcattctg |
23904392 |
T |
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| Q |
514 |
caaaaattcacgttccac |
531 |
Q |
| |
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|||| |||||| ||||| |
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| T |
23904391 |
caaaggttcacggtccac |
23904374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 23912077 - 23912510
Alignment:
| Q |
13 |
gtttggtggtccactttctctatttgatagaaacttaataagcattggccactgaaaaccataaaggataccaaaatcaatgatatgaagggtttcagct |
112 |
Q |
| |
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|||||| ||||||| |||||||| ||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23912077 |
gtttggaggtccaccttctctatctgataaaaactttataagtattggccactgaaaaccatataggataccaaaatcaatgatatgaagggtttcagca |
23912176 |
T |
|
| Q |
113 |
tttgcagcaactttcataatcatttcatttgcaaacaaatatgcaaatttcttgaatggagggctagtaaaatgaacttgatatgctttcaaaaactcag |
212 |
Q |
| |
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||||||| | ||||||||||||||| ||||||||| || |||||||| || ||||| ||| ||| | ||||||||||||||||||||||||||||| |
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| T |
23912177 |
tttgcagaagctttcataatcattttatttgcaaagaagtatgcaaactttttgaaaggactagtagatagatgaacttgatatgctttcaaaaactcag |
23912276 |
T |
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| Q |
213 |
cagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggcgcgcctcaaggccattggcaaagtaatgagc |
312 |
Q |
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||| || ||| ||||||||||| || ||||||||||||||||| || | || | ||||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
23912277 |
cagtagagatcctcttggtgctcggggaggaatagaatgtttgtgctctagtaccgtcgccgacaatgcgtgcctcaaggccattggcaaagtaatgagc |
23912376 |
T |
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| Q |
313 |
caccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatttctattgtcattggcatacatagtttgtgaa |
412 |
Q |
| |
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|| |||||| | | |||| ||| |||||||||||||||||||||||| ||| | || ||||||||||| || |||||||||||||||| || ||||||| |
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| T |
23912377 |
caacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcattcctgttgtcattggcatacacagattgtgaa |
23912476 |
T |
|
| Q |
413 |
cacataagcagaagattccttaagtctatcgttt |
446 |
Q |
| |
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||||||||||||||||||||||| ||||| |||| |
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| T |
23912477 |
cacataagcagaagattccttaaatctattgttt |
23912510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 41598074 - 41597949
Alignment:
| Q |
43 |
aaacttaataagcattggccactgaaaaccataaaggataccaaaatcaatgatatgaagggtttcagcttttgcagcaactttcataatcatttcattt |
142 |
Q |
| |
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|||||||||||| ||||||||||| |||||||| | ||||||||||||||| || ||||||||||| || ||| |||| ||||| ||||||| |||| |
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| T |
41598074 |
aaacttaataagaattggccactggaaaccatataagataccaaaatcaataatgtgaagggtttctgccttttcagctgttttcaatatcattttattt |
41597975 |
T |
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| Q |
143 |
gcaaacaaatatgcaaatttcttgaa |
168 |
Q |
| |
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||||| |||| |||||||| ||||| |
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| T |
41597974 |
gcaaagaaatgcgcaaattttttgaa |
41597949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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