View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8921_low_33 (Length: 503)

Name: NF8921_low_33
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8921_low_33
NF8921_low_33
[»] chr1 (18 HSPs)
chr1 (21-487)||(9093387-9093846)
chr1 (43-302)||(8864242-8864510)
chr1 (43-200)||(9136736-9136893)
chr1 (40-198)||(8971854-8972012)
chr1 (40-198)||(9006882-9007040)
chr1 (380-487)||(8864063-8864170)
chr1 (144-302)||(8868490-8868657)
chr1 (380-486)||(8972206-8972312)
chr1 (39-200)||(9100050-9100214)
chr1 (384-487)||(8868299-8868402)
chr1 (380-487)||(9065485-9065592)
chr1 (43-258)||(9072447-9072671)
chr1 (43-200)||(9065124-9065278)
chr1 (375-487)||(9136425-9136537)
chr1 (400-487)||(9099745-9099832)
chr1 (226-302)||(8972046-8972122)
chr1 (226-302)||(9007074-9007150)
chr1 (422-487)||(9007288-9007353)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 487
Target Start/End: Complemental strand, 9093846 - 9093387
Alignment:
Q  21 gattttcacatataatagtcatccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctga 120  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093846 gatttgcacatataagagtcatccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctga 9093747  T
Q  121 ccaagaagttggaacaataaagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaaagtagcctttggattgcgag 220  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093746 ccaagaagttggagcaataaagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaaagtagcctttggattgcgag 9093647  T
Q  221 ttgagacaggaagaagtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaataggctcaagcccataag 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||     
T  9093646 ttgagacaggaagaagtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaataggct------cataat 9093553  T
Q  321 cagcaactcctaaagctgtgaatggatcgctgcaattatcagtgtacactgacgtatacgtatcacagaaatcagatgtagacaagtaattgcgaggaaa 420  Q
     |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9093552 aagcaactcctaaagctgtgaatggatcgctgcaattttcatggtacactgacgtatac-tatcacagaaatcagatgtagacaagtaattgcgaggaaa 9093454  T
Q  421 tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatg 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093453 tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatg 9093387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 43 - 302
Target Start/End: Complemental strand, 8864510 - 8864242
Alignment:
Q  43 ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag 142  Q
    ||||||||| ||||||||||| ||||| || || || ||||| ||||| ||| ||| |||||||||| |||||||||||||||||||||||  ||  ||     
T  8864510 ccatgaaatatcaaatccatataccaatgctttgtgcatgacatcataggaaagtacttgatttctttgcaaacctgaccaagaagttggagtaaccaat 8864411  T
Q  143 ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcata---aaagtagcctttggattgcgag------ttgagacaggaag 233  Q
    ||||||||||||||||||||||| ||||   |||||||||||||||||||||||||   | | || ||||||||||  |||      || ||||| ||||    
T  8864410 ttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcatatatataataccctttggatttggagttcaaattcagacatgaag 8864311  T
Q  234 aagtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaa 302  Q
    ||||||| |||||||||| | |||| |||||  ||||||| ||||| | ||| |||||||||| |||||    
T  8864310 aagtattcacatatttaggactgttagtcacttgatggctgcaattcaagtaaactatatgctcaaaaa 8864242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 9136893 - 9136736
Alignment:
Q  43 ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag 142  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||| | | |||||||||||||| ||||||| |||||||||||| ||  ||   |     
T  9136893 ccatgaaacctcaaatccatacactaacgccttatgaatgacatcatatgtaagtaattgatttctttgcaaacccgaccaagaagttagagtaactgat 9136794  T
Q  143 ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa 200  Q
    ||||||||||| ||||||||||| ||||   ||| |||||||||||||||||||||||    
T  9136793 ttcacatgacagccaacttgaaaatcttgagcaactaaatcaccagccatagcataaa 9136736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 8971854 - 8972012
Alignment:
Q  40 catccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaata 139  Q
    |||||||||||||||||||||||| || || ||||| |||||||  ||||| ||| |||| | |||||||  ||||||  || |||| ||||||  ||      
T  8971854 catccatgaaatctcaaatccatagactaatgccttgtgaatgatatcataggaaagtaacttatttctttccaaacccaacaaagatgttggagtaacc 8971953  T
Q  140 aagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcata 198  Q
    || ||||||||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  8971954 aatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata 8972012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 9006882 - 9007040
Alignment:
Q  40 catccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaata 139  Q
    |||||||||||||||||||||||| || || ||||| |||||||  ||||| ||| |||| | |||||||  ||||||  || |||| ||||||  ||      
T  9006882 catccatgaaatctcaaatccatagactaatgccttgtgaatgatatcataggaaagtaacttatttctttccaaacccaacaaagatgttggagtaacc 9006981  T
Q  140 aagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcata 198  Q
    || ||||||||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  9006982 aatttcacatgacaaccaacttgaaaatcttgagcaattaaatcaccagccatagcata 9007040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 487
Target Start/End: Complemental strand, 8864170 - 8864063
Alignment:
Q  380 gtatcacagaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgt 479  Q
    |||||||| ||||| |||  ||||||| ||| |||||||| |||||||||||||  |||||||| ||| ||||| || || |||||||||||||||||||    
T  8864170 gtatcacaaaaatccgatcgagacaagaaatagcgaggaagtgaagagcaattagattgttgaactccgggatcaaccagtctgattgtgaaattgttgt 8864071  T
Q  480 agttgatg 487  Q
    ||||||||    
T  8864070 agttgatg 8864063  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 8868657 - 8868490
Alignment:
Q  144 tcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa---agtagcctttggattgcgag------ttgagacaggaaga 234  Q
    |||||||||||||||||||||| || ||  |||||||||||||||||||||||||||   | || |||| |||||  |||      |||||||| |||||    
T  8868657 tcacatgacaaccaacttgaaaatcatcagcaattaaatcaccagccatagcataaatataatacccttgggatttagagctccaattgagacatgaaga 8868558  T
Q  235 agtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaa 302  Q
    | |||| |||||||||| |||||||||||| |||||  ||||||| | ||| |||||||||| |||||    
T  8868557 aatattcacatatttaggattgttggtcactcgatgagtacaattcaagtaaactatatgctcaaaaa 8868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 486
Target Start/End: Original strand, 8972206 - 8972312
Alignment:
Q  380 gtatcacagaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgt 479  Q
    ||||||||||||| ||||  ||||||  ||| | |||||| |||||||||||||  |||||||||||||||||| || |  | |||||||||||||||||    
T  8972206 gtatcacagaaattagatcgagacaacgaatagagaggaagtgaagagcaattagattgttgaattccaggatcaaccaatcggattgtgaaattgttgt 8972305  T
Q  480 agttgat 486  Q
    |||||||    
T  8972306 agttgat 8972312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 9100214 - 9100050
Alignment:
Q  39 tcatccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaa---cctgaccaagaagttggaac 135  Q
    ||||||||||||||||||||||||| || ||||||||||||||||  ||||| ||| ||| |||||||||| |||||   ||  |||| ||||| ||| |    
T  9100214 tcatccatgaaatctcaaatccatatactaacgccttatgaatgatatcatatgaaagtacttgatttctttgcaaatttcccaaccatgaagtgggagc 9100115  T
Q  136 aataaagttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa 200  Q
     |  || ||| ||||||||||||||||||| ||||   ||| ||| | |||||| ||||||||||    
T  9100114 cactaacttcgcatgacaaccaacttgaaaatcttgagcaactaatttaccagcaatagcataaa 9100050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 487
Target Start/End: Complemental strand, 8868402 - 8868299
Alignment:
Q  384 cacagaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagtt 483  Q
    ||||||||||||||  || |||| ||| | ||||||||||||| |||||||||||||||||||||  ||| || |  | |||| ||||||||||||||||    
T  8868402 cacagaaatcagattgagtcaagaaatagagaggaaatgaagaacaattatcttgttgaattccaatatcaaccaatcggattatgaaattgttgtagtt 8868303  T
Q  484 gatg 487  Q
    ||||    
T  8868302 gatg 8868299  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 487
Target Start/End: Original strand, 9065485 - 9065592
Alignment:
Q  380 gtatcacagaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgt 479  Q
    ||||||||||||| ||||  ||||||  ||| ||| |||| ||||||||||||   || ||||| ||||||||| || || |||||||| ||||||||||    
T  9065485 gtatcacagaaattagatcgagacaacgaatggcgtggaagtgaagagcaattcatttcttgaactccaggatcaaccagtctgattgtaaaattgttgt 9065584  T
Q  480 agttgatg 487  Q
    ||||||||    
T  9065585 agttgatg 9065592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 258
Target Start/End: Complemental strand, 9072671 - 9072447
Alignment:
Q  43 ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag 142  Q
    |||||||||||||||||||||||| || ||||| || ||  | ||||| ||   || |||||||| | |||||||   | ||||||| |||  ||||||     
T  9072671 ccatgaaatctcaaatccatacactaatgccttttgtatttcatcatatgatattacttgatttccttgcaaacccttcaaagaagtgggagtaataaat 9072572  T
Q  143 ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa---agtagcctttggattgcgagt------tgagacaggaag 233  Q
    |||||||||||||||||||| || |||||  || ||| || |||||| ||||||||||   | |||||||| ||||  || |      ||||||||||||    
T  9072571 ttcacatgacaaccaacttgtaaatcttcagcagttatatgaccagctatagcataaatataatagccttttgatttggactcctgagtgagacaggaag 9072472  T
Q  234 aagtattgacatatttagaattgtt 258  Q
    ||||||| |||||||||| ||||||    
T  9072471 aagtattcacatatttaggattgtt 9072447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 9065124 - 9065278
Alignment:
Q  43 ccatgaaatctcaaatccatacaccaacgccttatgaatgacttcataagaacgtaattgatttcttcgcaaacctgaccaagaagttggaacaataaag 142  Q
    |||||||| |||||||||||| || |||||||| |||||| | ||||| ||| |  || | |||||| ||||||| ||| ||||||| |||  ||  ||     
T  9065124 ccatgaaacctcaaatccatagactaacgccttgtgaatggcatcataggaaag--atcg-tttctttgcaaaccagacaaagaagtgggagtaaccaat 9065220  T
Q  143 ttcacatgacaaccaacttgaaagtcttcgacaattaaatcaccagccatagcataaa 200  Q
    |||||||||||||||||||||||||| ||  |  ||||||||||| | ||||||||||    
T  9065221 ttcacatgacaaccaacttgaaagtcctcagccgttaaatcaccaactatagcataaa 9065278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 9136537 - 9136425
Alignment:
Q  375 tatacgtatcacagaaatcagatgtagacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaatt 474  Q
    |||| ||||| ||||||| ||||  ||||||  ||| | |||||| |||||||||||||  |||||||| ||||||||| || |  | |||||||||||     
T  9136537 tataggtatcgcagaaattagatcgagacaaagaatagagaggaagtgaagagcaattagattgttgaactccaggatcaaccaatcggattgtgaaatc 9136438  T
Q  475 gttgtagttgatg 487  Q
    |||||||||||||    
T  9136437 gttgtagttgatg 9136425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 487
Target Start/End: Complemental strand, 9099832 - 9099745
Alignment:
Q  400 agacaagtaattgcgaggaaatgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatg 487  Q
    ||||||| ||| ||| |||| |||||||||||||  |||||||| | ||||||| ||||  | |||||||||||| ||||||||||||    
T  9099832 agacaaggaatggcgcggaagtgaagagcaattagattgttgaacttcaggatcaactaatcggattgtgaaattattgtagttgatg 9099745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 8972046 - 8972122
Alignment:
Q  226 acaggaagaagtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaa 302  Q
    ||||||||||||||| |||||||||| |||||| || ||  ||||| ||||||| | ||| |||||||||| |||||    
T  8972046 acaggaagaagtattcacatatttaggattgttagttacttgatgggtacaattcaagtaaactatatgcttaaaaa 8972122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 9007074 - 9007150
Alignment:
Q  226 acaggaagaagtattgacatatttagaattgttggtcacacgatggctacaatttatgtatactatatgctgaaaaa 302  Q
    ||||||||||||||| |||||||||| |||||| || ||  ||||| ||||||| | ||| |||||||||| |||||    
T  9007074 acaggaagaagtattcacatatttaggattgttagttacttgatgggtacaattcaagtaaactatatgcttaaaaa 9007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 487
Target Start/End: Original strand, 9007288 - 9007353
Alignment:
Q  422 gaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatg 487  Q
    ||||||||||||  |||||||| |||| |||| || |  | |||||||||||||||||||||||||    
T  9007288 gaagagcaattagattgttgaactccaagatcaaccaatcggattgtgaaattgttgtagttgatg 9007353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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