View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_40 (Length: 491)
Name: NF8921_low_40
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 18033961 - 18033689
Alignment:
| Q |
16 |
aataagttcagtcaaaatatacatctctcatttttcttgacaagtacttatatcttatcacttgactgacgactattcatttttaaagtcttgataataa |
115 |
Q |
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| T |
18033961 |
aataagttcagtcaaaatatacatctctcatttttcttgacaagtacgtatatattatcacttgaccgacgactattcatttttaaagtcttaataataa |
18033862 |
T |
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| Q |
116 |
ttttgtcaacttgcgtgtgaaactttgaaataggcaagatcctattcccataatccatctatgcatgagtaatcaaaagtgattcaaacagtctagatgg |
215 |
Q |
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|||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
18033861 |
ttttgttaacttgagtgtgaaactttgaaataggaaagatcctattcccataatccatccatgcatgagtaatcaaaagtgattcaaacagtcaagatgg |
18033762 |
T |
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| Q |
216 |
acttaagatcttaagcggaggagaatctttttgagtgggagttagtaattttgggagagttgatccagacattaga |
291 |
Q |
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| T |
18033761 |
acttaggatcttaagc---ggagaatctttttgagtgggagttagtaattttgggagagttggtccagacattaga |
18033689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 293 - 478
Target Start/End: Complemental strand, 18033525 - 18033339
Alignment:
| Q |
293 |
agtttgatcttctataaaggtgtagattttggggga-cgtacaatttgacccagtatgaccacacacataaaccctaataagtgatatacaattcagcac |
391 |
Q |
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| T |
18033525 |
agtttgatcttctatgaaggtgtagacttgggggggtcgtatgacttgacccagtatgaccacccacataaaccctaataagtgatatacaattcagcac |
18033426 |
T |
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| Q |
392 |
agaagtggaacaaaatagattagcaactagaaaaacccgtccgaaataggtatatcaaccaacacccaaaacaaacactacctagta |
478 |
Q |
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| T |
18033425 |
agaagtggaacaaaatagattagcaactagaaaaacccgtccgaaataggtatatcaaacaacacccaaaacaaacactacctagta |
18033339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 5874038 - 5873960
Alignment:
| Q |
240 |
atctttttgagtgggagttagtaattttgggagagttgatccagacattagaaagtttgatcttctataaaggtgtaga |
318 |
Q |
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| T |
5874038 |
atctttttgagtgggagttagtgattttgagtgagttgttccagacattagagagttcgatcttttatgaaggtgtaga |
5873960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 6035054 - 6035152
Alignment:
| Q |
221 |
agatcttaagcggagga-gaatctttttgagtgggagttagtaattttgggagagttgatccagacattagaaagtttgatcttctataaaggtgtaga |
318 |
Q |
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| T |
6035054 |
agatcttaagtggaggacgtaactttttgagtgggagatagtgattttgggagagttattccagactttaaagagtctgatcttctctgaaggtgtaga |
6035152 |
T |
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