View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_41 (Length: 487)
Name: NF8921_low_41
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 28905075 - 28904818
Alignment:
| Q |
13 |
ataatacttggatgaaaagcttcgtttgaccaatactttgataaaatcaggcagaatgaaaaatgcttggatggaaaacagcatgttgattttaatattt |
112 |
Q |
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| T |
28905075 |
ataatacttggatgaaaagcttcgtttgaccaatactttgataaaatcaggcagaatgaaaaatgcttggatggaaaacagcatgttgattttaatattt |
28904976 |
T |
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| Q |
113 |
tcgttttttaggatagtcacgattttggagtggaagagaaaaccctacttgtttgagccattgatagaaagaaacaaaataatgtaccaagagaaaatgt |
212 |
Q |
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| T |
28904975 |
tcgtttattaggatagtcacgattttggagtggaagagaaaaccctacttgtttgagccattgatagaaagaaacaaaataatgtaccaagagaaaatgt |
28904876 |
T |
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| Q |
213 |
aacaaagcaactttcatttttgcccttttcctgttctccatttcctttgtgtattcta |
270 |
Q |
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| T |
28904875 |
aacaaagcaactttcatttttgcccttttcctgttctccatttcctttgtgtattcta |
28904818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 337 - 448
Target Start/End: Complemental strand, 28904751 - 28904640
Alignment:
| Q |
337 |
aattcccataggtaaagatgaatgagtaaagttcctcactaagaagagttaacgtttgcaaataccaatcttggacatgaattctagtatgttttggcaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28904751 |
aattcccataggtaaagatgaatgagtaaagttcctcactaagaagagttaacgtttgcaaataccaatcttggacatgaattctagtatgttttggcaa |
28904652 |
T |
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| Q |
437 |
cagtgaaaggaa |
448 |
Q |
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| T |
28904651 |
cagtgaaaggaa |
28904640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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