View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_44 (Length: 467)
Name: NF8921_low_44
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 48390701 - 48390279
Alignment:
| Q |
15 |
gatcacacacaccaatcaagaagatgactcggtttaactacgttcttacatatgagtgctcatttctgatatctccatgtcatgatatatttctttatga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48390701 |
gatcacacacaccaatcaagaagatgactcggtttaactacgttcttacatatgagtgctcatttctgatatctccatgtcatgatatatttctttatga |
48390602 |
T |
|
| Q |
115 |
acccaaatctgtattgcacgtgcctttgtgtgcgtaaagagtaaggttgcttggtagaccaaagaaagtggcatatggcttgggacccaaaaacaagaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48390601 |
acccaaatctgtattgcacgtgcctttgtgtgcgtaaagagtaaggttgcttggtagaccaaagaaagtggcatatggcttgggacccaaaaacaagaca |
48390502 |
T |
|
| Q |
215 |
ccacgctttattataatatattaccactacataaactatactcctagtagaagtagaacatggatgtttttattttgctgttttagtcaaacacaagaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48390501 |
ccacgctttattataatatattaccactacataaactatactcctagtagaagtagaacatggatgtttttattttgctgttttagtcaaacacaagaaa |
48390402 |
T |
|
| Q |
315 |
catagtagcaacaaatggacaaaaatattaattctttttggatgtttagcagctatctcattctcatcaacttgaagagagtatcaacatgcatttgttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48390401 |
catagtagcaacaaatggacaaaaatattaattctttttggatgtttagcagctatctcattctcatcaacttggagagagtatcaacatgcatttgttg |
48390302 |
T |
|
| Q |
415 |
aaacagtaaaagagaggaaaact |
437 |
Q |
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| T |
48390301 |
aaacagtaaaagagaggaaaact |
48390279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 17820750 - 17820719
Alignment:
| Q |
244 |
cataaactatactcctagtagaagtagaacat |
275 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17820750 |
cataaactatactcctagtagaagtagaacat |
17820719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 17860920 - 17860889
Alignment:
| Q |
244 |
cataaactatactcctagtagaagtagaacat |
275 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17860920 |
cataaactatactcctagtagaagtagaacat |
17860889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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