View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_46 (Length: 457)
Name: NF8921_low_46
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 24185663 - 24186095
Alignment:
| Q |
16 |
caaatccttctcttcctcaaactgttcttccccatcctctcctttcttccagaggttgaagcatcatgactcagaagaagaccatggccagaatcagaag |
115 |
Q |
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| T |
24185663 |
caaatcctcctcttcctcaaactgttcttccccatcctctcctttcttccagaggttgaagcatcatgactcagaagaagaccatggccagaatcagaag |
24185762 |
T |
|
| Q |
116 |
aaatcagttatcaccaaagtaaaggagaaggccaagaagttacgccacactctcagcaagaaaaaacacgaggactggaccgctactagtccctctgcgg |
215 |
Q |
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| T |
24185763 |
aaatcagttatcaccaaagtaaaggagaaggccaagaagttacgccacactctcagcaagaaaaaacacgaggattggaccgctactagtccctctgcgg |
24185862 |
T |
|
| Q |
216 |
gagcagagtcagaaggtgatggagcagaagaagatgctgaatatcatggagctccgagtaataaaataaatatataattgtcttctcttaatcctttttt |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24185863 |
gagcagggtcagaaggtgatggagcagaagaagatgctgaatatcatggagctccgagtaataaaataaatatataattgtcttctcttaattctttttt |
24185962 |
T |
|
| Q |
316 |
atttatatacatataattgttgtctcaaattaatatttcagtgtatgaatccgagatggcacctgaaggatacaaagaaaatgtcaggcaacattcaaga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24185963 |
atttatatacatataattgttgtctcaaattaatatttcagtgtatgaatccgagatggcacctgaaggatacaaagaaaatgtcaggcaacattcaaga |
24186062 |
T |
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| Q |
416 |
atgagtccaagaagcccacagacacaggttctg |
448 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
24186063 |
atgagtccaagaagcccacagacacatgttctg |
24186095 |
T |
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