View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8921_low_48 (Length: 454)
Name: NF8921_low_48
Description: NF8921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8921_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 52098963 - 52098536
Alignment:
| Q |
11 |
cagagatggttcatagtccataccatattgtaatnnnnnnnnnn--tgattctattgtaatataaaaatagaccatactattatagaattgaattcaaca |
108 |
Q |
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| T |
52098963 |
cagagatggttcatagtccataccatattgtaataaaaaaaaaaaatgattctattgtaatataaaaatagaccatactat---agaattgaattcaaca |
52098867 |
T |
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| Q |
109 |
ggaagaatagaccgcgaccggtagatattgactggagggttgaatatttggataaataacatccacaaggttcataacacaaagtacattaattttgagt |
208 |
Q |
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| T |
52098866 |
ggaagaatagaccgcgaccggtaaatattgactggaaggttgaatatttggataaataacatccacagggttcataacacaaagtacattaattttgagt |
52098767 |
T |
|
| Q |
209 |
cttcatattctttctcttaaaatcctaatacaaatttgaaacattagagctaccattccatggaagagagttttcagaatctgtttagatatttgccaga |
308 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
52098766 |
cttcatattctttctcttaatatcctaatacaaatttgaaacattagagctaccattccatggaagaaagtgttcagaatctgtttagatatttgccaga |
52098667 |
T |
|
| Q |
309 |
tgaaattctaggctgcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatctaccaggtggagagacttatggaaccatgttctt |
408 |
Q |
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| T |
52098666 |
tgaaattctaggctgcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatctaccaggtggagagacttatggaaccatgttctt |
52098567 |
T |
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| Q |
409 |
attaaacatggaactatggaagatatcactg |
439 |
Q |
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| T |
52098566 |
gttaaacatggaactatggaagatatcactg |
52098536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 292 - 438
Target Start/End: Complemental strand, 52091585 - 52091434
Alignment:
| Q |
292 |
tttagatatttgccagatgaaattctaggctgcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatc-----taccaggtggag |
386 |
Q |
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|||||| ||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||| |||| ||||||||||| ||| || ||||| |
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| T |
52091585 |
tttagaaatttgccagatgaaactctaggctgcataatatctcttctacctaatgaatatgcacttcaaacaagcctcatatcatatctactagatggag |
52091486 |
T |
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| Q |
387 |
agacttatggaaccatgttcttattaaacatggaactatggaagatatcact |
438 |
Q |
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| T |
52091485 |
aaacttgtggaaccaagttcttgtcaaacatggaactatagaagatatcact |
52091434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 7659442 - 7659517
Alignment:
| Q |
323 |
gcatagtatcttttctaccaaatgaatatgcacttgaaaccagcctcatatctaccaggtggagagacttatggaa |
398 |
Q |
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||||||| ||||||||||||||||||| || | ||||||| |||||||||||| |||||||||||||||||||| |
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| T |
7659442 |
gcatagtttcttttctaccaaatgaatcatcaatggaaaccatcctcatatctacaaggtggagagacttatggaa |
7659517 |
T |
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